Scaffold Ga0075478_10013374

Overview

Basic Information

• Taxon OID: 3300006026
• Scaffold ID: Ga0075478_10013374
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2792
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065668	Metagenome	127	N
F078585	Metagenome	116	N
F079927	Metagenome	115	N
F095309	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075478_100133742	F095309	AGG	MNYSEYRNKLRKLSAKYNEAYKRYGWGADTTRKLRQQKTDLRAKYAVHSFDYAVETLTSKGVL*
Ga0075478_100133743	F065668	AGGGGG	MFYTIWVGGVDVNSHLTNREEAYRIASNWRNDGYTDVIVERHKPYA*
Ga0075478_100133746	F079927	AGGAG	MSKDYREQSQLEDEADEKYLTMYQYYKQLTDFERGEYDALHSYPFDESEESNKDYTEGYRTGYEYAQQMGANNNE*
Ga0075478_100133747	F078585	GGAG	MSRYEDDSSYDYSDYCEGKGYYESYVEKPYDEDEQALKRIEAREEAERLNKLYPPIGKQEMQERIKEVKTRLGAKYND*