Scaffold Ga0075478_10004009

Overview

Basic Information

• Taxon OID: 3300006026
• Scaffold ID: Ga0075478_10004009
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5241
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026158	Metagenome	199	Y
F032077	Metagenome	181	N
F050008	Metagenome	146	N
F063169	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075478_100040091	F032077	GGA	MGDEETQIDLKTRMRDALAPMLANEQEKTAKNSLPNNNPEKWLTAASLFLSGASVHEVKKTMTLNHHIAKRINGIVKASDDARVFRQERAIQLASTIDEINSIGEKIAASYLDGSPEAEEKIKKAETKDLANLAVAQEKLHRTFDNVTGNNVQKIEVRHITTPEEAMSLIDSLPEAE
Ga0075478_1000400912	F026158	AGAAG	VHYGDILELNPTIEFKMSDATESNMCSADESKLSAVRCMEGFKDKMEMLMKAGDILDHCTGGRSTSEEAAEVRARSLNIWQETGCTIAEAADRGGANRGSFRRWLIKEGHHTPKSK*
Ga0075478_100040097	F063169	N/A	MQSQLIDDILQHLDKFEKTGDWFHFSLALDALDDLKKQIESNNNE*
Ga0075478_100040099	F050008	AGG	MSLVNMNETQRELVLDLAEDFAPFVKKVESGMALTRNHYGAYGSMISKLSKGNRKLALVFSYALMMAGANGQGISDAMGAFFPE*