Scaffold Ga0075474_10003256

Overview

Basic Information

• Taxon OID: 3300006025
• Scaffold ID: Ga0075474_10003256
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6774
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024529	Metagenome / Metatranscriptome	205	Y
F042214	Metagenome / Metatranscriptome	158	Y
F058099	Metagenome / Metatranscriptome	135	Y
F095381	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_1000325612	F024529	N/A	MFTTLTDRKAFGATYQWAILSLLPMDDGSGCLTQDGMRPTDINEALGMPNEARTALAITLKRMARLGLIKRHELGPHWVEYTRTLPLRKRERIARWIQG*
Ga0075474_1000325614	F042214	N/A	MQTFLTDEEILQLVTTGMVKLTDDLIIRMSESSESYEDSDWYNDPNCVMSRHHY*
Ga0075474_100032567	F058099	N/A	MTKQLLISQLRKGKNGNSILEILDVLCAGMGTDDSRQDNVPTLDEIEF*
Ga0075474_100032569	F095381	N/A	MNNTTIQVVINGNQVQGQIDEIAKILGMVSNTMQQPVSSTLDEELLPFNKFAIKELSPHLGEELATQVVNKLETCAKSFYPDFRNFIGMYHKVGSIEQRQLLKTLSAIYRFKFGRYMNESAKYSLKSEIKYATICPHCGAIANAFVMRLTKEGLW*