Scaffold Ga0081539_10021458

Overview

Basic Information

• Taxon OID: 3300005985
• Scaffold ID: Ga0081539_10021458
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4314
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023069	Metagenome / Metatranscriptome	211	Y
F041303	Metagenome / Metatranscriptome	160	Y
F054269	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081539_100214583	F023069	GAG	MDTNGARAYETPGAQEPSPAEALRRLQQQVGELQAYLTHFVSAKIDGFVLSARQLALWAVLGVVGLIAAVGLVVTAVVLVLVGAADGFGLLFGGRWWLGAIVVGGGTLVLLALGIFIGMRILQSKWRQQKVQQYDERQLQQHATFGHSVADRATEETALQH*
Ga0081539_100214584	F041303	N/A	MQHSDTALLTGPQKKRHYNTDDERVFLTQQAADAKTAMQHTVADMQATAKEVANVRWWTQQYPWYAVGAATVLGFIAATAVVPSADHRTPPAPPVANQAAARPSWAASLFEMVRSTLMSIIIDAINTRGQQSSRTQPTQADASLS*
Ga0081539_100214585	F054269	AGGAG	MAENQPRKAGEYERPMTGTSSSMALIIGIIALLAVIVVAVLFLR*