Scaffold Ga0081540_1013204

Overview

Basic Information

• Taxon OID: 3300005983
• Scaffold ID: Ga0081540_1013204
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5385
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010959	Metagenome	297	Y
F012827	Metagenome / Metatranscriptome	277	Y
F035379	Metagenome / Metatranscriptome	172	Y
F066618	Metagenome	126	Y
F087589	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081540_10132041	F012827	AGG	MRKGQVLRAGHFRNLHGLIEAAMSPSAPFLQFLSRVLRVMDQQVRVPRQLDQPRINLLAVLDICTNDEHFAISLDSETVRSAGMVVPLGADHGIYIVDACEVFGGISDLQELEIGPHVIQLHWEIFGLHLDFEDLAQIGDRLALAERQDRDFLAGVVSRSKERKALDVVPVKVRERDDDLVLLVAHGDEISAQISQSRSRVHDGDAVRIGEHDLQAGGVAAELLKTSIANRDGSPRTVKLESH*
Ga0081540_10132044	F087589	AGGAG	MKSTTPMRIRAFRFFTDRFAYRERSDYLIELVAFGIIVIAVTLSLASAMATTLK*
Ga0081540_10132045	F035379	AGGGGG	MKNRKNYVMPSTPTLAQSGLLAVLLQRQRRKAIELTRHRAHREQIREMLGSSLIGSISRLHSITAGRRFRRGFGGETVP*
Ga0081540_10132047	F066618	AGG	MDKHSRAFGRPGKGKRRRLSTPERKRRSEKEVIPDQLVDFATDAIRDGQTTVATFLALFHPDLRFRAFRAYTAAVSAYMAKWRR*
Ga0081540_10132049	F010959	AGG	MNGSATKALFWWAIVAQVAGAQVFFWDALPDYRELTAGGVVMGTPRDFTLAVFGLVIMQSAYWYARCLQPQIQFRHRVVLGHVLLCVSEVSFFFVSALATVAMFDHWKRSQFVLWKLMLLASAIFAFFCYKRQLASVGDALLEAKPEDAGKANIEPKETGRL*