Metagenome / Metatranscriptome Family F087589

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087589
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	51 residues
Representative Sequence	VKTTNSLRSRASHFFSSRYANRERPDYLVELVAFGIILIAVTLSLANAMTTH
Number of Associated Samples	85
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.24 %
% of genes near scaffold ends (potentially truncated)	34.55 %
% of genes from short scaffolds (< 2000 bps)	72.73 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.636 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (13.636 % of family members)
Environment Ontology (ENVO)	Unclassified (25.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.818 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.25% β-sheet: 0.00% Coil/Unstructured: 48.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF03548	LolA	29.09
PF00196	GerE	2.73
PF13302	Acetyltransf_3	2.73
PF00571	CBS	1.82
PF00144	Beta-lactamase	1.82
PF13668	Ferritin_2	0.91
PF13087	AAA_12	0.91
PF13418	Kelch_4	0.91
PF13181	TPR_8	0.91
PF02517	Rce1-like	0.91
PF01179	Cu_amine_oxid	0.91
PF13738	Pyr_redox_3	0.91
PF13450	NAD_binding_8	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	29.09
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.82
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.82
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.82
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG3733	Cu2+-containing amine oxidase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.64 %
Unclassified	root	N/A	6.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.64 %
Unclassified	root	N/A	6.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.64 %
Unclassified	root	N/A	6.36 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	75.45 %
Unclassified	root	N/A	6.36 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	75.45 %
Unclassified	root	N/A	6.36 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	21.82 %
Unclassified	root	N/A	6.36 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	3.64 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	21.82 %
Unclassified	root	N/A	6.36 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	3.64 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	21.82 %
Unclassified	root	N/A	6.36 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	3.64 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	21.82 %
Unclassified	root	N/A	6.36 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.82 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	0.91 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	21.82 %
Unclassified	root	N/A	6.36 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.82 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.91 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10011255	All Organisms → cellular organisms → Bacteria	2470	Open in IMG/M
3300000890\|JGI11643J12802_10338513	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	848	Open in IMG/M
3300000955\|JGI1027J12803_100859238	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	818	Open in IMG/M
3300002568\|C688J35102_120195322	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	921	Open in IMG/M
3300002899\|JGIcombinedJ43975_10031748	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	863	Open in IMG/M
3300003203\|JGI25406J46586_10213917	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	563	Open in IMG/M
3300004479\|Ga0062595_100059499	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1807	Open in IMG/M
3300004643\|Ga0062591_100851896	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	848	Open in IMG/M
3300005175\|Ga0066673_10002656	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6639	Open in IMG/M
3300005290\|Ga0065712_10073014	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4534	Open in IMG/M
3300005295\|Ga0065707_10779405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	607	Open in IMG/M
3300005332\|Ga0066388_100832899	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1510	Open in IMG/M
3300005332\|Ga0066388_101123579	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1333	Open in IMG/M
3300005332\|Ga0066388_103270099	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	828	Open in IMG/M
3300005332\|Ga0066388_103316456	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	822	Open in IMG/M
3300005455\|Ga0070663_100662436	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	884	Open in IMG/M
3300005535\|Ga0070684_101309115	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	682	Open in IMG/M
3300005535\|Ga0070684_101617683	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300005563\|Ga0068855_101467844	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	701	Open in IMG/M
3300005618\|Ga0068864_101711413	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	634	Open in IMG/M
3300005713\|Ga0066905_100982273	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	744	Open in IMG/M
3300005764\|Ga0066903_100000688	All Organisms → cellular organisms → Bacteria	22250	Open in IMG/M
3300005764\|Ga0066903_100331243	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2441	Open in IMG/M
3300005764\|Ga0066903_100994027	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1533	Open in IMG/M
3300005764\|Ga0066903_102798858	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	946	Open in IMG/M
3300005764\|Ga0066903_107654044	Not Available	556	Open in IMG/M
3300005937\|Ga0081455_10451065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	878	Open in IMG/M
3300005937\|Ga0081455_10980849	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300005983\|Ga0081540_1013204	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5385	Open in IMG/M
3300006175\|Ga0070712_100052014	All Organisms → cellular organisms → Bacteria	2855	Open in IMG/M
3300006854\|Ga0075425_100955532	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300006854\|Ga0075425_101541701	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	750	Open in IMG/M
3300006871\|Ga0075434_100283952	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1675	Open in IMG/M
3300006871\|Ga0075434_101421354	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	703	Open in IMG/M
3300009094\|Ga0111539_10670225	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1208	Open in IMG/M
3300009094\|Ga0111539_10677576	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1200	Open in IMG/M
3300009101\|Ga0105247_11399797	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	566	Open in IMG/M
3300009147\|Ga0114129_11563412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	809	Open in IMG/M
3300009792\|Ga0126374_10007161	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4108	Open in IMG/M
3300009792\|Ga0126374_10630184	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	796	Open in IMG/M
3300010041\|Ga0126312_10939700	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	631	Open in IMG/M
3300010043\|Ga0126380_11894636	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	542	Open in IMG/M
3300010047\|Ga0126382_10000712	All Organisms → cellular organisms → Bacteria	13038	Open in IMG/M
3300010047\|Ga0126382_10547607	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	941	Open in IMG/M
3300010047\|Ga0126382_11406251	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	637	Open in IMG/M
3300010047\|Ga0126382_11448148	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	629	Open in IMG/M
3300010048\|Ga0126373_11202496	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	824	Open in IMG/M
3300010359\|Ga0126376_10737418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	953	Open in IMG/M
3300010362\|Ga0126377_10786452	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1009	Open in IMG/M
3300010362\|Ga0126377_13235681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
3300010366\|Ga0126379_10019249	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5071	Open in IMG/M
3300010376\|Ga0126381_100334555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2087	Open in IMG/M
3300010397\|Ga0134124_10033933	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4239	Open in IMG/M
3300010397\|Ga0134124_11125999	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	802	Open in IMG/M
3300010398\|Ga0126383_10693048	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1097	Open in IMG/M
3300012212\|Ga0150985_100300202	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	699	Open in IMG/M
3300012354\|Ga0137366_10269847	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1258	Open in IMG/M
3300012918\|Ga0137396_10078170	All Organisms → cellular organisms → Bacteria	2325	Open in IMG/M
3300012958\|Ga0164299_10220199	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300012960\|Ga0164301_10344448	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300012961\|Ga0164302_11862187	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300012975\|Ga0134110_10340656	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	654	Open in IMG/M
3300013105\|Ga0157369_12514706	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	521	Open in IMG/M
3300014157\|Ga0134078_10658542	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	509	Open in IMG/M
3300014969\|Ga0157376_10115135	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2373	Open in IMG/M
3300015371\|Ga0132258_10668247	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2613	Open in IMG/M
3300015372\|Ga0132256_100006893	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	9786	Open in IMG/M
3300015372\|Ga0132256_101663046	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	748	Open in IMG/M
3300016270\|Ga0182036_10016514	All Organisms → cellular organisms → Bacteria	4099	Open in IMG/M
3300016319\|Ga0182033_10026163	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3652	Open in IMG/M
3300016319\|Ga0182033_10660807	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	912	Open in IMG/M
3300016371\|Ga0182034_10963596	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	736	Open in IMG/M
3300016445\|Ga0182038_10419084	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300018061\|Ga0184619_10043972	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1927	Open in IMG/M
3300018433\|Ga0066667_10418066	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1088	Open in IMG/M
3300019883\|Ga0193725_1010215	All Organisms → cellular organisms → Bacteria	2666	Open in IMG/M
3300021560\|Ga0126371_10852159	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1056	Open in IMG/M
3300025914\|Ga0207671_11279105	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	572	Open in IMG/M
3300025930\|Ga0207701_10004102	All Organisms → cellular organisms → Bacteria	14852	Open in IMG/M
3300025930\|Ga0207701_10059747	All Organisms → cellular organisms → Bacteria	3484	Open in IMG/M
3300025930\|Ga0207701_11212776	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300025944\|Ga0207661_11746108	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300026075\|Ga0207708_10697539	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	867	Open in IMG/M
3300026118\|Ga0207675_102269496	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	557	Open in IMG/M
3300026547\|Ga0209156_10316792	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	699	Open in IMG/M
3300026550\|Ga0209474_10011166	All Organisms → cellular organisms → Bacteria	7248	Open in IMG/M
3300027453\|Ga0207624_100155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1907	Open in IMG/M
3300030969\|Ga0075394_11561986	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	576	Open in IMG/M
3300031231\|Ga0170824_121094004	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1044	Open in IMG/M
3300031231\|Ga0170824_125588315	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	757	Open in IMG/M
3300031573\|Ga0310915_11056651	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300031719\|Ga0306917_10050901	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2787	Open in IMG/M
3300031744\|Ga0306918_10282624	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1274	Open in IMG/M
3300031890\|Ga0306925_10353871	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1577	Open in IMG/M
3300031910\|Ga0306923_10149098	All Organisms → cellular organisms → Bacteria	2669	Open in IMG/M
3300031938\|Ga0308175_101957121	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	657	Open in IMG/M
3300031941\|Ga0310912_10046462	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	3035	Open in IMG/M
3300031941\|Ga0310912_11051536	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300031947\|Ga0310909_10943662	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	707	Open in IMG/M
3300031954\|Ga0306926_10491673	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M
3300032066\|Ga0318514_10764371	Not Available	514	Open in IMG/M
3300032205\|Ga0307472_102282043	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
3300032261\|Ga0306920_101174710	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1110	Open in IMG/M
3300033289\|Ga0310914_10241530	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1621	Open in IMG/M
3300033412\|Ga0310810_11372387	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	545	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.36%
Host-Associated	Host-Associated	23.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.45%
Plants	Host-Associated → Plants	23.64%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.91%
Sediment	Environmental → Aquatic → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.09%
Loam	Environmental → Terrestrial → Soil → Loam	16.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.18%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.73%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.27%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027453	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-D (SPAdes)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100112552	3300000597	Forest Soil	MKDNTNMKAANPLRICASLFLSNRYANTERPVYLVELVAFGIIVIAVILSLV*
JGI11643J12802_103385132	3300000890	Soil	MKGNANMKAANSLRIGASLLFGSRHANRERPDYLVELIAFAIIVIAVILSLG*
JGI1027J12803_1008592383	3300000955	Soil	MKTTNSLRSRASHFFSDRYACRERPDNLVELIAFGIILIAVTLSLANAVTTTLR*
C688J35102_1201953223	3300002568	Soil	MKTTNSLRIRASRFFNNRDAGGERPDYLVELIAFGIILIAVTLSLGHAITTTLR*
JGIcombinedJ43975_100317481	3300002899	Soil	VKNTNSLRIRAFRFFSNRSAYKERPDYLVELVAFGIIVIAVMLSLG*
JGI25406J46586_102139171	3300003203	Tabebuia Heterophylla Rhizosphere	MKATNSLRVRASRFFSSQYAGGERADYLIELIAFGIIVIAVALSLG*
Ga0062595_1000594992	3300004479	Soil	MKITNPIRFGASSLFNNRYGPGERPDYLVELVAFGVIVIAVALSLG*
Ga0062591_1008518962	3300004643	Soil	MKTTNRLWIRASRFFSNRWAYRERPDYLVELVAFGIILIAVTLSLGNTVATTFR*
Ga0066673_100026567	3300005175	Soil	MKTTNSLRIRAFRFFNNRDAGGERPDYLVELIAFGIILIAVTLSLGHAITTTLR*
Ga0065712_100730146	3300005290	Miscanthus Rhizosphere	MKATNPLRICASRFFNNRYANRERPDYLVELVAFGIIMIAVTLSLG*
Ga0065707_107794051	3300005295	Switchgrass Rhizosphere	MKTINSLRSRASHFFSDRYACRERPDSLVELIAFGIILIAVTLSLGNAITTTLR*
Ga0066388_1008328992	3300005332	Tropical Forest Soil	MKTTNSLRSRASHFFRNRYAYTERPDYLVELIAFGIIVIAVTLSLA*
Ga0066388_1011235794	3300005332	Tropical Forest Soil	NVNVKTTNSLRSSASRFFRNRSAYRERPDYLVELVALGIILIAVTLSLANATATH*
Ga0066388_1032700992	3300005332	Tropical Forest Soil	MKPTISMRIRASRFFTERYSYRERPNYLVELVAFGIIAIKAISSLADAMATLR*
Ga0066388_1033164561	3300005332	Tropical Forest Soil	RSRASHFFSDRYAGRERPDDLIALVAFGIIVIALTLSLG*
Ga0070663_1006624362	3300005455	Corn Rhizosphere	VKGNVNVKATNPLRICASRFFSNRYANRERPDYLVELVAFGIIVIAVTLSLR*
Ga0070684_1013091152	3300005535	Corn Rhizosphere	MKTTNRLWIRASRFFSNRWAYRERPDYLVELVAFGIILIAVTLSLGNTVAMTFR*
Ga0070684_1016176833	3300005535	Corn Rhizosphere	MKTTNSLRVRAFRFFSDRYNYREGPDNLIELVAFGIIVITAALSLANAMTTTLK*
Ga0068855_1014678441	3300005563	Corn Rhizosphere	VKGNVNVKATNPLRICASRFFSNRYANRERPDYLVELVAFGIIVIAVT
Ga0068857_1014809502	3300005577	Corn Rhizosphere	MKTTNSLRVRASQYFRNRSSCGDRPDYLIELVAFGIIVIAVT
Ga0068864_1017114131	3300005618	Switchgrass Rhizosphere	NRHLISERNDANMKTKNSLRVRASHFFRNRSACEDRPDYLIELVAFGIIVIAVALSLG*
Ga0066905_1009822733	3300005713	Tropical Forest Soil	MKTTNSLRSRASHFFSDRSAGRERPDSLVELVAFGIILIAVALSLGNAITTTLR*
Ga0066903_10000068821	3300005764	Tropical Forest Soil	MKTTNSLRVRAFRFFSERYAYRERPDYLVELVAFGIVVIIASLSLADAMATALK*
Ga0066903_1003312434	3300005764	Tropical Forest Soil	MKITNSLRSRASHFFSDRYACRERPDSLIELVAFGIILIAVTLSLANAMTTH*
Ga0066903_1009940273	3300005764	Tropical Forest Soil	MKITNSLRSRASHFFSDRYACRERPDSLVELIAFGIILIAVALSLGNAITTTLR*
Ga0066903_1027988582	3300005764	Tropical Forest Soil	VKTTNSLRSRASRFFSNRYAYGERPDYLVELVAFGIILIAVALSLGNAITTTLR*
Ga0066903_1076540442	3300005764	Tropical Forest Soil	MKTINLFRLRASRFFSGRSAERERPDYLIELVAFGIILITLTLLANAMATPLK*
Ga0081455_104510651	3300005937	Tabebuia Heterophylla Rhizosphere	MKTTNSLRGRASRFFSNRYAYREREYLVELVAFGIIAITATLSLANAMASTLK*
Ga0081455_109808492	3300005937	Tabebuia Heterophylla Rhizosphere	MKTTNPLRIRTSRFFSDRYTYRERPDYLIELVAFGIIVITAALSLANGLATTLK*
Ga0081540_10132044	3300005983	Tabebuia Heterophylla Rhizosphere	MKSTTPMRIRAFRFFTDRFAYRERSDYLIELVAFGIIVIAVTLSLASAMATTLK*
Ga0070712_1000520143	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKTTNSLRARASRFFSARYAERPDNLIELVAFGIIVITLTLLANAMAMPLK*
Ga0075425_1009555322	3300006854	Populus Rhizosphere	MKTTNSLRSRASHFFSDRYACRERPDNLVELIAFGIILIAVALSLGNPITTTLR*
Ga0075425_1015417013	3300006854	Populus Rhizosphere	DSLRIRASHFFRNRSAREERPDSLVELVAFGIIVIAVMLSLG*
Ga0075434_1002839522	3300006871	Populus Rhizosphere	MKTTNSLRSRASHFFSDRYACRERPDSLVELIAFGIILIAVALSLGNPITTTLR*
Ga0075434_1014213541	3300006871	Populus Rhizosphere	MKTTNSLRVRASQYFRNRSSCGDRPDYLIELVAFGIILIAVTLSLANAMTRIEMNTIGAI
Ga0111539_106702254	3300009094	Populus Rhizosphere	MKTTNSLRSRASHLFSDRYACRERPDSLVELIAFGIILIAVALSLGNPITTTLR*
Ga0111539_106775762	3300009094	Populus Rhizosphere	MKTTNSLRIRASRFFNNRDAGGERPDYLVELVAFGIILIAVTLSLATR*
Ga0105247_113997971	3300009101	Switchgrass Rhizosphere	MKATNPLRICASRFFSNRYANRERPDYLVELVAFGIIVIAVT
Ga0114129_115634122	3300009147	Populus Rhizosphere	MKTTNSLRIRASRLFSSHYARGERPDYLIELIAFGIILIAVTLSLANAMTAH*
Ga0126374_100071617	3300009792	Tropical Forest Soil	MKTINSLRLRASRFFSGRSAERERPDYLIELVAFGIILITLTLLANAMATPLK*
Ga0126374_106301842	3300009792	Tropical Forest Soil	MKTTNSLRSRASHFFSDRYADRERPVYLIELVAFGIILIAVTLSLANATATH*
Ga0126312_109397001	3300010041	Serpentine Soil	MNLKITNSLRNRACRFFSNRYACGERPDYLIELVAFGIIVIAVTLSLGNAMATH*
Ga0126380_118946361	3300010043	Tropical Forest Soil	NSLRSSASRFFRNRSAYTERPDSLVELVAFGIILIAVTLSLANAMTTH*
Ga0126382_1000071211	3300010047	Tropical Forest Soil	MKTTNSLRVRAARFFSGRYPYRERPEYLIELVAFGIILITLTLLANAMATPLQ*
Ga0126382_105476072	3300010047	Tropical Forest Soil	MKTTNSLRSRASHFFSDRYANRERPAHLVELVAFGIIVIAVTMSLP*
Ga0126382_114062513	3300010047	Tropical Forest Soil	NMKTTNPLRIRASRFFSDRYGCRERPDYLVELVAFGIILIAVALSLGNAVATTLK*
Ga0126382_114481481	3300010047	Tropical Forest Soil	MKTTNSLRIRAARFFGGRYPYRERPEYLIELVAFGIILITLTLLANAMATPLQ*
Ga0126373_112024962	3300010048	Tropical Forest Soil	MKTTNSLRSRASHFFSDRYADRERPDSLVELIAFGIIVI
Ga0126376_107374182	3300010359	Tropical Forest Soil	MKPTTSMRIRTSGFRAHRYAHREQPDSLIELVAFGIIIITA
Ga0126377_107864522	3300010362	Tropical Forest Soil	MKTTNSLRIRAARFFGGRYPYRERPEYLIELVAFGIILITLTLLANAMATPFQ*
Ga0126377_132356811	3300010362	Tropical Forest Soil	TANFLRIRASRFFSNRHAGSEPPENLIELVAFGIIVIAVTLSLGHAIATTLR*
Ga0126379_100192495	3300010366	Tropical Forest Soil	MKTTNPLRIRASRFFSDRYGCRERPDYLVELVAFGIILIAVALSLGNAVATTLK*
Ga0126381_1003345552	3300010376	Tropical Forest Soil	MKDNTNMKAANPLRICASLFFSSRYANRERPVYLVELVAFGIIVIAVILSLR*
Ga0134124_100339334	3300010397	Terrestrial Soil	MKTKNSLRVRASHFFRNRSACEDRPDYLIELVAFGIIVIAVALSLG*
Ga0134124_111259993	3300010397	Terrestrial Soil	NMKATNQLRICASRFFNNRYASKERPDYLVELVAFGIIIIAVTLSLG*
Ga0126383_106930482	3300010398	Tropical Forest Soil	MKTTNSLRVRAARFFGGRYPYRERPEYLIELVAFGIILITLTLLANAMATPLQ*
Ga0150985_1003002023	3300012212	Avena Fatua Rhizosphere	HLISERSNVTMKTTNSLRIRASRFFNNRDAGGERPDYLVELIAFGIILIAVTLSLGHAITTTLR*
Ga0137366_102698472	3300012354	Vadose Zone Soil	MKTTNPLRICASRFFSNRYANRERPDYLVELVAFGIILIAVTLSLANATVTH*
Ga0137396_100781703	3300012918	Vadose Zone Soil	VKTTDSLRIRASHFFRNRSACKERPDSLVELVAFGIIIIAVALSLG*
Ga0164299_102201994	3300012958	Soil	MKTTESLRIRASHFFRNRSACKERPDSLVELIAFGIILIAVTLSLGNAVATTLR*
Ga0164301_103444484	3300012960	Soil	KTTNPLRIRASRFVSNRYANRERPDYLVELVAFGIILIAVTLSLGNAVATTLR*
Ga0164302_118621871	3300012961	Soil	MKTTNPLRIRASRFVSNRYANRERPDYLVELVAFGIIIIAVILSLGNAVATTLR*
Ga0134110_103406562	3300012975	Grasslands Soil	MKTTNSLRIRASHFFRNRSAYTERPDSLVELVAFGIILIAVTLSLA
Ga0157369_125147062	3300013105	Corn Rhizosphere	MKTTNSLRSRASHFFSDRYACRERPDSLVELIAFGIILI
Ga0134078_106585422	3300014157	Grasslands Soil	NMKTTNSLRIRASHFFRNRSAYTERPDSLVELVAFGIILIAVTLSLANAMATH*
Ga0157376_101151351	3300014969	Miscanthus Rhizosphere	MKTKTSLRVRASHFFRNRSACEDRPDYLIELVAFGIIVIA
Ga0132258_106682474	3300015371	Arabidopsis Rhizosphere	MKTTNSLRSRASHFFSDRYRCRERPDNLVELIAFGIILIAVALSLGNPITTTLR*
Ga0132256_1000068931	3300015372	Arabidopsis Rhizosphere	MKATNPLRICASRFFSNRYANRERPNYLVELVAFGIIVIAVILSL
Ga0132256_1016630461	3300015372	Arabidopsis Rhizosphere	NRHLISERSNVNVKTTNSLRSSASRFFRNRSAYTERPDSLVELVAFGIILIAVTLSLANAMATH*
Ga0182036_100165144	3300016270	Soil	MEPTTSLRSRASRFFKKRYAYRERPDYLIELVAFGIIVITVILSLANAMTA
Ga0182033_100261635	3300016319	Soil	MKTTNSLRSRASHFFSNRYACRERPDSLVELIAFGIVLIAVTVSLGNAITTTLR
Ga0182033_103710911	3300016319	Soil	ASHFFSSRYANRERPDYLVELVVFGIILIAVTLSLANATAHALR
Ga0182033_106608071	3300016319	Soil	MKTTNSLRSRASHFFSNRRAYTEQPDSLIELVAFGIILIAVTLSLANAMTTH
Ga0182034_109635963	3300016371	Soil	MKITNSLRSRASHFFSNRYACRERPDSLVELIAFGIVLIAVTLSLGNAVTTTLR
Ga0182038_104190841	3300016445	Soil	MEPTTSLRSRASRFFKKRYAYRERPDYLIELVAFGIIVITVILSLANAMT
Ga0184619_100439724	3300018061	Groundwater Sediment	MKTTNSLRVRVSRFFSDRYTYREGPDNLIELVAFGIIVITAALSLANAMTT
Ga0066667_104180662	3300018433	Grasslands Soil	MKTTNSLRIRASRFFNNRDAGGERPDYLVELIAFGIILIAVTLSLGHAITTTLR
Ga0193725_10102151	3300019883	Soil	VKTTNSLRIRASHFFRNRYACTERPDYLVELVAFGIIAIAVTLSLGNAMAITLR
Ga0126371_108521591	3300021560	Tropical Forest Soil	MKTTNSLRSRASHFFSSGYANKERPVHLIELVALGIILIAVTLSLANATATH
Ga0207697_101343251	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MKTTNSLRIGASRFFRKRSAYRERPDYLVELVAFG
Ga0207671_112791051	3300025914	Corn Rhizosphere	TNPLRICASRFFSNRYANRERPDYLVELVAFGIIVIAVTLSLR
Ga0207701_100041024	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKTTNSLRSRASHFFSDRYACRERPDSLVELIAFGIILIAVTLSLGNAITTTLR
Ga0207701_100597477	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKTTNPLWIRASRFFSNRWAYRERPDYLVELVAFGIILIAVTLSLGNTVAMTFR
Ga0207701_112127761	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKGNVNMKTTNPLRICASRFFSNRHPNRERPDYLIELVAFGIILIAVALSLGSAAA
Ga0207665_106001541	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKATNPLRICASRFFNNRYANRERPDYLVELVAFGIIM
Ga0207661_117461081	3300025944	Corn Rhizosphere	TVNMKTTNSLRVRAFRFFSDRYNYREGPDNLIELVAFGIIVITAALSLANAMTTTLK
Ga0207708_106975391	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VKGNVNMKATNPLRIGASRFFSNRYANRERPEYLVELVALGIIVIAVNL
Ga0207675_1022694963	3300026118	Switchgrass Rhizosphere	GNVNMKATNPLRICASRFFSNRYANRERPDYLVELVAFGIIVIAVTLSLR
Ga0209156_103167923	3300026547	Soil	MKTTNSLRIRASRFFNNRDAGGERPDYLVELIAFGIILIAVTLSLGHAITTTL
Ga0209474_100111669	3300026550	Soil	MKTTNSLRIRASRFFNNRDAGGERPDYLVELIAFGIILIAVTLSLGHAITTALR
Ga0207624_1001552	3300027453	Soil	MNMETTNPLLVRVSRFFSDRYTYREGPDNLIELVAFGIIVITTALSLANAMTTTLK
Ga0075394_115619861	3300030969	Soil	RHLISERSNVNMKTTNWLRSRASHFFSDRHAYRERPDSLVELVAFGIILIAVTLSLANATATH
Ga0170824_1210940042	3300031231	Forest Soil	MKITNSLRSRASHFFSDRRAYTERPDSLVELVAFGIILIAVTLSLANATATH
Ga0170824_1255883151	3300031231	Forest Soil	MKTTNWLRSRASHFFSDRHAYRERPDSLVELVAFGIILIAVTLSLANAMTTH
Ga0310915_110566511	3300031573	Soil	MKTTNSLRSRASHFFSNRSANRERPDYLVELVAFGIILIAVTLSL
Ga0306917_100509014	3300031719	Soil	VKTTNSLRSRASHFFSSRYANRERPDYLVELVAFGIILIAVTLSLANAMTTH
Ga0306918_102826241	3300031744	Soil	MKPTTSPRSRASRFFKERYAYRERPDYLTELVAFGIIVITVILSLA
Ga0318543_105630581	3300031777	Soil	MEPTTSLRSRASRFFKERYAYRERPDYLIELVAFGNNRNHRSC
Ga0306925_103538713	3300031890	Soil	MKTTNSLRSRVSRFFSNGYTSRERPDSLVELVAFGIILIAVALSLATR
Ga0306923_101490981	3300031910	Soil	MKTTNSLRSRASHFFSDRYACRERPDSLVELIAFGIILIAVTVSLGNAITTTLR
Ga0308175_1019571211	3300031938	Soil	MKTTNSLRSRASHFFSDRYACRERPDNLVELIAFGIILIAVTLSLGHAITTTLR
Ga0310912_100464625	3300031941	Soil	MKPTTSPRSRASRFFKERYAYRERPDYLTELVAFGIIVITVILSLANAMTATLK
Ga0310912_110515361	3300031941	Soil	MKTTNSLRSRASHFFSDRYACRERPDSLVELIAFGIVLIAVTVSLGNAITTTLR
Ga0310909_109436622	3300031947	Soil	MKSSSHCERSNVNVKTTKSLRSRASHFFSSRYANRERPDYLVELVAFGIILIAVTLSLANATAHALR
Ga0306926_104916734	3300031954	Soil	MKTTNSLRSRVSRFFSNGYTSRERPDSLVELVAFGIILIAVTLSLANAMTTH
Ga0318514_107643711	3300032066	Soil	MKTTNSLRSRASHFFRNRSAYTERPDSLIELVAFGIILIAVT
Ga0307472_1022820432	3300032205	Hardwood Forest Soil	VKNTNSLRIRASRFFSNRYAYKERPDYLVELVAFGIIVIAVALSLGNAMEITLR
Ga0306920_1011747101	3300032261	Soil	LRSRASHFFSSRYANRERPAHLVELVAFGIILIAVTLSLANATAHALR
Ga0310914_102415302	3300033289	Soil	MKTTNSLRSRASHFFSNRYACRERPDSLVELIAFGIILIAVTVSLGNAITTTLR
Ga0310810_113723871	3300033412	Soil	TTNSLRSRASHFFSDRSACTERPDYLVELVAFGIILIAVTLSLANAMTTH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087589

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences