NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081540_1000110

Scaffold Ga0081540_1000110


Overview

Basic Information
Taxon OID3300005983 Open in IMG/M
Scaffold IDGa0081540_1000110 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)88536
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (79.49%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035398Metagenome / Metatranscriptome172Y
F042321Metagenome / Metatranscriptome158Y
F072793Metagenome121Y
F092908Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0081540_100011018F042321GGAGGMIRRLSWPLALVAALVCLAPARADAFEISAGAAYWTENSSAFSVTLGKLWNLPGFQLGPRVGFAYVTSPNSAGVPADLVIRFDIATFYVEGQAGAWLLFARDPVVRFHATGGGGLALGPIRLGVEAGYLHDGAILGARVSLSL*
Ga0081540_100011035F072793GAGMPRPWIIGVPLVALLLGLFVGTVLGPRLQLKRQLHDREVQQKDHLTRLGQCLQLERWNLERDGDGMVVRAEIRAGREGRLALDAHADQGNDEVLVPDVQRAPLLPALVRAGEEVTLERHLRRIRPGDPDAISLRFSCRPPGPVGIFGVVEYATGVSREGSDGFGNVVRPLPPAR*
Ga0081540_10001104F035398GGAGMVKRLGAEFRRRGMQGHLAPLRLYWLALRHDLVQPERHGLHVQLSEEMVVEWFKLLRLPPYEREYPVQPPGSRCQRCPPGDGPAMEVVTERTFPEGRKVACLACRAAWLELEPTTRMGRGKDASRRKQSG*
Ga0081540_100011046F092908GGAMWTLGWDSMRLSERENRKERLERERGAVLDVWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPASPPAREPGQR*
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