Metagenome / Metatranscriptome Family F092908

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092908
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	67 residues
Representative Sequence	MRLSEHETRKERLERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPATPPPREPGQR
Number of Associated Samples	82
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.37 %
% of genes near scaffold ends (potentially truncated)	26.17 %
% of genes from short scaffolds (< 2000 bps)	71.03 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.112 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.561 % of family members)
Environment Ontology (ENVO)	Unclassified (27.103 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.056 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.15% β-sheet: 0.00% Coil/Unstructured: 80.85%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF10431	ClpB_D2-small	46.73
PF08308	PEGA	18.69
PF16200	Band_7_C	0.93
PF16078	2-oxogl_dehyd_N	0.93
PF02817	E3_binding	0.93
PF09243	Rsm22	0.93
PF00326	Peptidase_S9	0.93
PF01799	Fer2_2	0.93
PF04339	FemAB_like	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	0.93
COG3146	Predicted N-acyltransferase	General function prediction only [R]	0.93
COG5459	Ribosomal protein RSM22 (predicted mitochondrial rRNA methylase)	Translation, ribosomal structure and biogenesis [J]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.11 %
Unclassified	root	N/A	15.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.11 %
Unclassified	root	N/A	15.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.11 %
Unclassified	root	N/A	15.89 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	61.68 %
Unclassified	root	N/A	15.89 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	58.88 %
Unclassified	root	N/A	15.89 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	58.88 %
Unclassified	root	N/A	15.89 %

Name	Rank	Taxonomy	Distribution
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	58.88 %
Unclassified	root	N/A	15.89 %

Name	Rank	Taxonomy	Distribution
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	50.47 %
Unclassified	root	N/A	15.89 %

Name	Rank	Taxonomy	Distribution
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	48.60 %
Unclassified	root	N/A	15.89 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	1.87 %

Name	Rank	Taxonomy	Distribution
unclassified Myxococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae	46.73 %
Unclassified	root	N/A	15.89 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	0.93 %
Melittangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Melittangium	0.93 %

Name	Rank	Taxonomy	Distribution
Myxococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	46.73 %
Unclassified	root	N/A	15.89 %
Melittangium boletus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Melittangium → Melittangium boletus	0.93 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17485546	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1473	Open in IMG/M
2228664021\|ICCgaii200_c0492084	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	740	Open in IMG/M
2228664022\|INPgaii200_c0975288	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1405	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10889816	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	717	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100829347	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1633	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100830551	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1107	Open in IMG/M
3300001427\|JGI20200J14955_1005210	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1745	Open in IMG/M
3300004114\|Ga0062593_100005464	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	5272	Open in IMG/M
3300004157\|Ga0062590_100780735	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300005093\|Ga0062594_100254260	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1289	Open in IMG/M
3300005293\|Ga0065715_10829070	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	599	Open in IMG/M
3300005327\|Ga0070658_10002957	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	14081	Open in IMG/M
3300005332\|Ga0066388_100684352	All Organisms → cellular organisms → Bacteria	1635	Open in IMG/M
3300005332\|Ga0066388_100940608	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1436	Open in IMG/M
3300005332\|Ga0066388_105941514	Not Available	617	Open in IMG/M
3300005332\|Ga0066388_107139758	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300005344\|Ga0070661_100010225	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	6519	Open in IMG/M
3300005355\|Ga0070671_100111687	All Organisms → cellular organisms → Bacteria	2296	Open in IMG/M
3300005456\|Ga0070678_100875553	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300005545\|Ga0070695_100038653	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	3013	Open in IMG/M
3300005764\|Ga0066903_100010203	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	8937	Open in IMG/M
3300005764\|Ga0066903_102180968	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1068	Open in IMG/M
3300005764\|Ga0066903_102430660	All Organisms → cellular organisms → Bacteria → Proteobacteria	1014	Open in IMG/M
3300005983\|Ga0081540_1000053	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	123827	Open in IMG/M
3300005983\|Ga0081540_1000110	All Organisms → cellular organisms → Bacteria → Proteobacteria	88536	Open in IMG/M
3300005983\|Ga0081540_1005797	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	9139	Open in IMG/M
3300006854\|Ga0075425_100980403	Not Available	965	Open in IMG/M
3300006954\|Ga0079219_10103961	Not Available	1403	Open in IMG/M
3300009168\|Ga0105104_10000975	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	22322	Open in IMG/M
3300009792\|Ga0126374_11189371	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	610	Open in IMG/M
3300010043\|Ga0126380_11522261	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	593	Open in IMG/M
3300010046\|Ga0126384_10234690	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1473	Open in IMG/M
3300010046\|Ga0126384_10277358	Not Available	1368	Open in IMG/M
3300010046\|Ga0126384_10681830	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	909	Open in IMG/M
3300010048\|Ga0126373_12494711	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	576	Open in IMG/M
3300010360\|Ga0126372_10042144	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	3002	Open in IMG/M
3300010360\|Ga0126372_10180871	Not Available	1730	Open in IMG/M
3300010360\|Ga0126372_10810868	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	928	Open in IMG/M
3300010360\|Ga0126372_11064841	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300010361\|Ga0126378_10242071	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1895	Open in IMG/M
3300010361\|Ga0126378_11817857	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	693	Open in IMG/M
3300010371\|Ga0134125_11670938	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300010376\|Ga0126381_100543857	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1644	Open in IMG/M
3300010376\|Ga0126381_102272147	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	779	Open in IMG/M
3300010376\|Ga0126381_103635347	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	604	Open in IMG/M
3300011107\|Ga0151490_1081908	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	784	Open in IMG/M
3300012948\|Ga0126375_11957821	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300013105\|Ga0157369_10007200	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	12821	Open in IMG/M
3300015371\|Ga0132258_10198059	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	4870	Open in IMG/M
3300015371\|Ga0132258_10220775	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	4611	Open in IMG/M
3300015371\|Ga0132258_10802115	Not Available	2374	Open in IMG/M
3300015372\|Ga0132256_101691251	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	742	Open in IMG/M
3300016270\|Ga0182036_10188067	Not Available	1503	Open in IMG/M
3300016445\|Ga0182038_10079622	Not Available	2308	Open in IMG/M
3300021445\|Ga0182009_10026247	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	2275	Open in IMG/M
3300021445\|Ga0182009_10591343	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300021560\|Ga0126371_10680404	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300025461\|Ga0208851_1000401	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	19515	Open in IMG/M
3300025920\|Ga0207649_10017131	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	4103	Open in IMG/M
3300025925\|Ga0207650_11151632	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	660	Open in IMG/M
3300025944\|Ga0207661_11863992	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	547	Open in IMG/M
3300027743\|Ga0209593_10046170	Not Available	1686	Open in IMG/M
3300028381\|Ga0268264_10000333	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	73322	Open in IMG/M
3300031538\|Ga0310888_10713159	Not Available	616	Open in IMG/M
3300031543\|Ga0318516_10041302	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	2481	Open in IMG/M
3300031544\|Ga0318534_10066339	Not Available	2038	Open in IMG/M
3300031544\|Ga0318534_10391052	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	799	Open in IMG/M
3300031544\|Ga0318534_10628168	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	609	Open in IMG/M
3300031545\|Ga0318541_10618244	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	606	Open in IMG/M
3300031561\|Ga0318528_10706421	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	539	Open in IMG/M
3300031564\|Ga0318573_10200173	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300031679\|Ga0318561_10039105	Not Available	2332	Open in IMG/M
3300031736\|Ga0318501_10497091	Not Available	665	Open in IMG/M
3300031736\|Ga0318501_10666468	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	573	Open in IMG/M
3300031740\|Ga0307468_100584085	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300031740\|Ga0307468_101767850	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	584	Open in IMG/M
3300031744\|Ga0306918_10735476	Not Available	772	Open in IMG/M
3300031768\|Ga0318509_10302880	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	894	Open in IMG/M
3300031777\|Ga0318543_10351769	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300031778\|Ga0318498_10070637	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1569	Open in IMG/M
3300031793\|Ga0318548_10174039	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300031795\|Ga0318557_10103721	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
3300031833\|Ga0310917_10583261	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300031896\|Ga0318551_10498844	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	698	Open in IMG/M
3300031908\|Ga0310900_10095271	All Organisms → cellular organisms → Bacteria	1895	Open in IMG/M
3300031910\|Ga0306923_12117990	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	567	Open in IMG/M
3300031912\|Ga0306921_11298408	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300031943\|Ga0310885_10307385	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	821	Open in IMG/M
3300031954\|Ga0306926_10414744	Not Available	1661	Open in IMG/M
3300032009\|Ga0318563_10144528	Not Available	1274	Open in IMG/M
3300032043\|Ga0318556_10327721	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	801	Open in IMG/M
3300032065\|Ga0318513_10676579	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	506	Open in IMG/M
3300032089\|Ga0318525_10574649	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300032090\|Ga0318518_10610976	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300032261\|Ga0306920_100263727	Not Available	2569	Open in IMG/M
3300032770\|Ga0335085_11786516	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300032782\|Ga0335082_10014876	All Organisms → cellular organisms → Bacteria	8435	Open in IMG/M
3300032782\|Ga0335082_10024082	All Organisms → cellular organisms → Bacteria	6523	Open in IMG/M
3300032782\|Ga0335082_10112859	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	2678	Open in IMG/M
3300032829\|Ga0335070_10004568	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	16206	Open in IMG/M
3300033004\|Ga0335084_11809018	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300033412\|Ga0310810_10140521	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Melittangium → Melittangium boletus	2820	Open in IMG/M
3300033433\|Ga0326726_10249223	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300033480\|Ga0316620_10971992	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	824	Open in IMG/M
3300033486\|Ga0316624_11725382	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	578	Open in IMG/M
3300033513\|Ga0316628_100032210	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	5157	Open in IMG/M
3300034150\|Ga0364933_002526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	4056	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.11%
Host-Associated	Host-Associated	15.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.24%
Plants	Host-Associated → Plants	15.89%
Aquatic	Environmental → Aquatic	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.37%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.48%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Peat	Environmental → Terrestrial → Peat	0.93%
Floodplain	Environmental → Terrestrial → Floodplain	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.41%
Loam	Environmental → Terrestrial → Soil → Loam	8.41%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.74%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.87%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025461	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03279100	2088090014	Soil	MQLAEKDAWKERLKRERPAVLDAWPLPAQAAVPEADEPLDRAAEGEDEPITEKLPVTPPREPG
ICCgaii200_04920842	2228664021	Soil	MRLSENDPRQERLEQERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAEPAPRKPAQG
INPgaii200_09752882	2228664022	Soil	MQLAEKDAWKERLKRERPAVLDAWPLPAQAAVPEADEPLDRAAEGEDEPITEKLPVTPPREPGRS
ICChiseqgaiiFebDRAFT_108898162	3300000363	Soil	MRLSENDPRQERLEQERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAEPAPRKPAQG*
INPhiseqgaiiFebDRAFT_1008293472	3300000364	Soil	MQLAEKDAWKERLKRERPAVLDAWPLPAQAAVPEADEPLDRAAEGEDEPITEKLPVTPPREPGRS*
INPhiseqgaiiFebDRAFT_1008305512	3300000364	Soil	MQLADNEPRKERPKRERPAVLDAWPLPAQAAVTEADEPLDRSDEGEDEPITEEFPATPPRDSSRS*
JGI20200J14955_10052101	3300001427	Arctic Peat Soil	MRLADQNSRKVSHEKAPQAVLDAWPLPAQAAVPEADEPLDRAAEGDDEPITEKVPAVSLAVSDRS*
Ga0062593_1000054643	3300004114	Soil	MRLSEHDPRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAAPSPRGPGQR*
Ga0062590_1007807351	3300004157	Soil	MRLSEHDPRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAAPAPRGPGQR*
Ga0062594_1002542602	3300005093	Soil	MRFSEHDPRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPPRGSG
Ga0065715_108290702	3300005293	Miscanthus Rhizosphere	MRFSEHDPRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPPRGSGQR*
Ga0070658_100029576	3300005327	Corn Rhizosphere	MRFSEHDPRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPPRGSGHR*
Ga0066388_1006843522	3300005332	Tropical Forest Soil	MRLSERETRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSDEGDDEPITEKVPASPPPRDPGQR*
Ga0066388_1009406083	3300005332	Tropical Forest Soil	MRLAEQDARKDRQQDGHAVLDAWPLPSQAAEPEADEPLDRSAEGDDEPITEKVPAAAPPPREPGKH*
Ga0066388_1059415142	3300005332	Tropical Forest Soil	MQLSEREPRKKPLEHEPGAELDAWPLPAQAAVPEADEPLDLEVDGDDEPITEKVPATPPREPGRG*
Ga0066388_1071397581	3300005332	Tropical Forest Soil	DPMRLSEHETRKDRLERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPALPAPQKPGQR*
Ga0070661_1000102254	3300005344	Corn Rhizosphere	MRLSENDPRQERLEQERRAVLDAWPLPAQAAVPEADEPLESAEGDDEPITEKVPAAAPASRKPGQR*
Ga0070671_1001116872	3300005355	Switchgrass Rhizosphere	MRFSEHDPREERLEHERGAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPPRGPGQR*
Ga0070678_1008755532	3300005456	Miscanthus Rhizosphere	MRLTEHSPRKDRRERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAVPAPRSPGQR*
Ga0070695_1000386531	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRFSEHDPRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPPREPGRR*
Ga0066903_1000102037	3300005764	Tropical Forest Soil	MRLSDQDARKDRKNRSKDAPHAVLDAWPLPAQAAVPEADEPLDRSDEGDDEPITEKVPATPKQTDADPE*
Ga0066903_1021809681	3300005764	Tropical Forest Soil	MHLSERDARKDRKSRSKDAPHAILDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPATPKQTDADQE*
Ga0066903_1024306601	3300005764	Tropical Forest Soil	MSMQLSEHEPRKKRLEEVRRAVLDAWPLPAQAAVPEADEPLDLEVEGDDEPITEKVPAPPPREPGPRER*
Ga0081540_100005349	3300005983	Tabebuia Heterophylla Rhizosphere	MQLSEKTPRQDQEQGAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPAAPSPRTTGKG*
Ga0081540_100011046	3300005983	Tabebuia Heterophylla Rhizosphere	MWTLGWDSMRLSERENRKERLERERGAVLDVWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPASPPAREPGQR*
Ga0081540_10057974	3300005983	Tabebuia Heterophylla Rhizosphere	MQLSEHEPRKKRLEEERGAVLDAWPLPAQAAVPEADEPLDLEVEGDDEPITEKVPASPAREPGRG*
Ga0075425_1009804032	3300006854	Populus Rhizosphere	SMQLAEHDPRKERHERKRGAVLDVWPLPAQAAVPEADEPLDRAAEGDDEPITEKVPAAPAREREPGRR*
Ga0079219_101039611	3300006954	Agricultural Soil	RLTEHDPRKERLEREGRAVLDAWPLPAQAAVPEADEPLDRSGEGDDEPITEKVPAGPPPRGSGQR*
Ga0105104_100009756	3300009168	Freshwater Sediment	MRLSEKDPRQERLERERRAVLDAWPLPAQAAVPEADEPLDRSDEGDDEPITEKVSADPSPRKPGQR*
Ga0126374_111893712	3300009792	Tropical Forest Soil	MRLSENEPRKERVKRERPAVLDAWPLPAQAAVPEADEPLDRETEGDDEPITEKVPAGSQPGEPGQH*
Ga0126380_115222612	3300010043	Tropical Forest Soil	MQMRLSEHETRKDRMKRGREAVLDVWPLPAQAAVPEADEPLDRSGEGDDEPITEKVPAATPPAREPGQR*
Ga0126384_102346901	3300010046	Tropical Forest Soil	MLLSEHETRKDRLERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPALPAPQKPGQR*
Ga0126384_102773581	3300010046	Tropical Forest Soil	MRLSERETRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPPPRDPGQR*
Ga0126384_106818301	3300010046	Tropical Forest Soil	MRLADQDARKDRQEQGHAVLDVWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPSAPPREGV*
Ga0126373_124947112	3300010048	Tropical Forest Soil	MQLSEHETRKDRLERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPAPQKPGQR*
Ga0126372_100421443	3300010360	Tropical Forest Soil	MRLSERETRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPATPKQTDADQE*
Ga0126372_101808711	3300010360	Tropical Forest Soil	MRLSERETRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSIEGDDEPITEKVPASPPPRDPGQR*
Ga0126372_108108681	3300010360	Tropical Forest Soil	MSMQLSEHEPRKKRLEEERGAVLDAWPLPAQAAVPEADEPLDLEVEGDDEPITEKVPATPPRESGRG*
Ga0126372_110648411	3300010360	Tropical Forest Soil	MRLSEHETRKDRFERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPAPEKPGQR*
Ga0126378_102420712	3300010361	Tropical Forest Soil	MVAGRGGFDFRMHLSERDARKDRKNRSKDAPHAILDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPATPKQTDADQE*
Ga0126378_118178572	3300010361	Tropical Forest Soil	LAEQDARKDRQEGHAALDAWPLPAQAAVPEADEPLDRSGEGDDEPITEKVPAAAPPPREGPAKVFDTS
Ga0134125_116709382	3300010371	Terrestrial Soil	MRFSEHDPRNERLERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPPRGSGQR*
Ga0126381_1005438572	3300010376	Tropical Forest Soil	MPMRLSEHETPRKDRLKGKAVLDVWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPATPPAPREPRQR*
Ga0126381_1022721472	3300010376	Tropical Forest Soil	VAGRAGFDFRMDLSEREPRKDRKSRSKGATHAILDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPKRTDADHE*
Ga0126381_1036353471	3300010376	Tropical Forest Soil	MSMRLAEHQPRKDRLKGKAVLDVWPLPAQAAVPEADEPLDRSVEGDDEPITQKVPTPPAPPREPGQR*
Ga0151490_10819082	3300011107	Soil	MRLSDHEPRKERREDERGAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPS
Ga0126375_119578212	3300012948	Tropical Forest Soil	QDRLERERRAVLDAWPLPAQAAVPEADEPLESAEGDDEPITEENPAASRSPEGR*
Ga0157369_100072009	3300013105	Corn Rhizosphere	MRFSEHDPRKERLERDRRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPPRGSGQR*
Ga0132258_101980594	3300015371	Arabidopsis Rhizosphere	MAMRLSEHETRKDRLKGERQAVLDVWPLPVQAAVPEADEPLDRSVEGDDEPITEKVPAASPPPREPRQR*
Ga0132258_102207753	3300015371	Arabidopsis Rhizosphere	MRLADQNPWKNRTEQPPHAVLDAWPLPAQAAVPEADEPLERAAEGDDEPITEKVPAHSETAPDRS*
Ga0132258_108021151	3300015371	Arabidopsis Rhizosphere	KDRLKGERQAVLDVWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPAAAPLQREPRQR*
Ga0132256_1016912511	3300015372	Arabidopsis Rhizosphere	MAMRLSEHETRKDRLKGERQAVLDVWPLPVQAAVPEADEPLDRSVEGDDEPITEKVPAAAPLQREPRQR*
Ga0182036_101880671	3300016270	Soil	MSMRLSERESPRKDRLKGKAVLDVWPLPAQAAVPEADEPLDLEVEGDDEPITEKVPATPPPREPGQR
Ga0182038_100796221	3300016445	Soil	ISTVVESSVWTACPGGSWTLGCDSMRLSEHETRKERLERVRRAVLDAWPVPAQAAVPEADEPLERSVEGDDEPITEKVPVTPPPREPGQR
Ga0182009_100262472	3300021445	Soil	MRFSEHDPRKERMERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPPRGSGQR
Ga0182009_105913432	3300021445	Soil	MRLTEHTPRKERLERDRRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPPRGSGQR
Ga0126371_106804042	3300021560	Tropical Forest Soil	MRLSEHETRKDRFERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPAPEKPGQR
Ga0208851_100040114	3300025461	Arctic Peat Soil	MRLADQNSRKVSHEKAPQAVLDAWPLPAQAAVPEADEPLDRAAEGDDEPITEKVPAVSPAVSDRS
Ga0207649_100171314	3300025920	Corn Rhizosphere	MRLSENDPRQERLEQERRAVLDAWPLPAQAAVPEADEPLESAEGDDEPITEKVPAAAPASRKPGQR
Ga0207650_111516322	3300025925	Switchgrass Rhizosphere	MRFSEHDPRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVP
Ga0207661_118639921	3300025944	Corn Rhizosphere	MRLTEHDPRKERLEREGRAVLDAWPLPAQAAVPEADEPLDRSGEGDDEPITEKVPAGPPPRGSGQR
Ga0209593_100461702	3300027743	Freshwater Sediment	MRLSEKDPRQERLERERRAVLDAWPLPAQAAVPEADEPLDRSDEGDDEPITEKVSADPSPRKPGQR
Ga0268264_100003332	3300028381	Switchgrass Rhizosphere	MRFSEHDPRKERLERDRRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPPRGSGQR
Ga0310888_107131592	3300031538	Soil	LERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPPPRGSGQR
Ga0318516_100413023	3300031543	Soil	MRLSEHETRKERLERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKLPATPPPREPGQR
Ga0318534_100663392	3300031544	Soil	MRLSEHETRKERLERVRRAVLDAWPVPAQAAVPEADEPLERSVEGDDEPITEKVPVTPPPREPGQR
Ga0318534_103910522	3300031544	Soil	MRLSEHETRKERLERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPATPPPREPGQR
Ga0318534_106281681	3300031544	Soil	MHLSERDPRKDRKSRSKGATHAILDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPKRTDADHE
Ga0318541_106182441	3300031545	Soil	LADQDARKDQQQGHAVLDVWPLPAQAAVPEADEPLDRSGEGDDEPITEKVPA
Ga0318528_107064212	3300031561	Soil	MHLSERDPRKDRKSRSKGATHAILDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPA
Ga0318573_102001732	3300031564	Soil	GFDFRMHLSERDPRKDRKSRSKGATHAILDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPKRTDADHE
Ga0318561_100391052	3300031679	Soil	VAGRAGFDFRMHLSERDPRKDRKSRSKGATHAILDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPKRTDADHE
Ga0318501_104970911	3300031736	Soil	SVWTACPGGSWTLGCDSMRLSEHETRKERLERVRRAVLDAWPVPAQAAVPEADEPLERSVEGDDEPITEKVPVTPPPREPGQR
Ga0318501_106664682	3300031736	Soil	MWTLGCDPMRLSEHETRKDRFERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPAPEKPGQR
Ga0307468_1005840851	3300031740	Hardwood Forest Soil	MQLSEQDPRKDRLDRQGRAVPDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPGGPPSREPSRG
Ga0307468_1017678502	3300031740	Hardwood Forest Soil	MRFSEHDPRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAGPP
Ga0306918_107354761	3300031744	Soil	EHETRKERLERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPVTPPPREPGQR
Ga0318509_103028802	3300031768	Soil	MRLSEHETRKERLERVRRAVLDAWPVPAQAAVPEADEPLERSVEGDDEPITEKVPVTP
Ga0318543_103517691	3300031777	Soil	MRLSEHETRKERLERVRRAVLDAWPVPAQAAVPEADEPLDRSVEGDDEPITEKLPATPPPREPGQR
Ga0318498_100706372	3300031778	Soil	MRLSEHETRKERLERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPVTPPPREPGQR
Ga0318548_101740392	3300031793	Soil	GGSWTLGCDSMRLSEHETRKERLERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPVTPPPREPGQR
Ga0318557_101037212	3300031795	Soil	MRLSEHETRKERLERVRRAVLDAWPVPAQAAVPEADEPLDRSVEGDDEPITEKVPASPKRTDADHE
Ga0310917_105832611	3300031833	Soil	ACPGGSWTLGCDSMRLSEHETRKERLERVRRAVLDAWPVPAQAAVPEADEPLDRSVEGDDEPITEKVPATPPPREPGQR
Ga0318551_104988441	3300031896	Soil	MQLAEHEPRKKRLGEARGAELDAWPLPAQAAVPEADEPLDLEVEGDDEPITEKVPATPPR
Ga0310900_100952712	3300031908	Soil	MAMRLSEHETRKDRLKGERQAVLDVWPLPVQAAVPEADEPLDRSVEGDDEPITEKVPAASPPPREPRQR
Ga0306923_121179901	3300031910	Soil	MRLSERETPRKDRLKGKAVLDVWPLPAQAAVPEADEPLDRSVEGDDEPITEKLPTPPPASREPGQR
Ga0306921_112984081	3300031912	Soil	MQLAEHEPRKKRLGEARGAELDAWPLPAQAAVPEADEPLDLEVEGDDEPITEKVPATPPREPGHR
Ga0310885_103073851	3300031943	Soil	MRFSEHDPRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKAPAGPPPRGSGQR
Ga0306926_104147442	3300031954	Soil	CRAGMWTLGCDPMRLSEHETRKDRFERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPAPEKPGQR
Ga0318563_101445282	3300032009	Soil	MRLSEHETRKDRFERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPAAPAQEKPGQR
Ga0318556_103277212	3300032043	Soil	MRLSEHETRKERLERVRRAVLDAWPVPAQAAVPEADEPLDRSVEGDDEPITEKVPATPPPREPGQR
Ga0318513_106765792	3300032065	Soil	MWTLGCHPMRLSEHETRKDRFERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPAPEKPGQR
Ga0318525_105746491	3300032089	Soil	LERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPATPPPREPGQR
Ga0318518_106109761	3300032090	Soil	TACPGGSWTLGCDSMRLSEHETRKERLERVRRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKLPATPPPREPGQR
Ga0306920_1002637272	3300032261	Soil	VAWRAGFDFRMHLSERDPRKDRKSRSKGATHAILDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASPKRTDADHE
Ga0335085_117865161	3300032770	Soil	MRLTEHTRKERRLERDRGAVLDAWPLPAQAAIPEADEPLDRSEEGDDEPITEKVPAGPPPRGPGQR
Ga0335082_100148763	3300032782	Soil	MRTADPDARTNGDEPRRRAPLDVWPLPKEAAVPEADEPLDRSEEGEDEPITEKVPVSPSREPPRSKR
Ga0335082_100240825	3300032782	Soil	MRLAEQQDPRKKRIERERVLDAWPLPAQAAVPEADEPLDRSAEGEDEPITEKVPAAPAPKPGRS
Ga0335082_101128591	3300032782	Soil	MRLSEQDARKDRKTPSKDAPHAILDAWPLPAQAAVPEADEPLDRSVEGDDEPITEELPATPGRTDADAE
Ga0335070_100045682	3300032829	Soil	MRLADQDARKERRERERDAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKVPAVPPARDPGHR
Ga0335084_118090182	3300033004	Soil	RRDWWTLGWESMRLSERETRKERLERERRAVLDAWPLPAQAAVPEADEPLDRSVEGDDEPITEKVPASSPALEPGQR
Ga0310810_101405213	3300033412	Soil	ERLEQERRAVLDAWPLPAQAAVPEADEPLESAEGDDEPITEKVPAAAPASRKPGQR
Ga0326726_102492232	3300033433	Peat Soil	MRLSEKDARKDRKSRPEPHAVLDAWPLPAQAAVPEADEPLDRSAEGDDEPITEKLPATTPAPAEPDRD
Ga0316620_109719922	3300033480	Soil	MRLAEHEARKNRLERERRAVLDVWPLPAQAAVPEADEPLDRAVEGEDEPITEELPATPPARNPDQR
Ga0316624_117253822	3300033486	Soil	MRLAEHEARKNRLERERRAVLDVWPLPAQAAVPEADEPLDRAVEGEDEPITEKLPATPPARNPDQP
Ga0316628_1000322103	3300033513	Soil	MECSALTACLVDSSALGCVRMRLAEHDARKNRLERERRAVLDVWPLPAQAAVPEADEPLDRAVEGEDEPITEKLPATPPARHPDQP
Ga0364933_002526_3645_3842	3300034150	Sediment	MRLAEQDVRKNRRERPPQAVLDAWPLPAQAAVPEADEPLDRAAEGDDEPITEKVPAAPLKERGRT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092908

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences