Scaffold Ga0066364_10000301

Overview

Basic Information

• Taxon OID: 3300005960
• Scaffold ID: Ga0066364_10000301
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11105
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076164	Metagenome / Metatranscriptome	118	N
F097478	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066364_1000030115	F076164	N/A	MIKVYWTRAIAPGSGERHFISPLRFQEPIFLNKDIDYKEFLGPELLHCPGIVEEMTKTVVIKSPVTVDLEYADDQNLKIHRQDPAFGQIFFGQPQGKNGIHQLGFGYIFFADKPLMATNLPAYYHDNGYTRNVDAICGSYDIGRWFRPGVRPLFQKKPGTKNININEGDALMYVKFNTDEKIELVEFDAHELDQLGFHSPINACITLKNQLPPTPLNKAYEYFDNARMRQKVLKIIKRNVI*
Ga0066364_1000030122	F097478	GAGG	VQHKISQMCDKVSVIYEKSMNLRRLKYDTPKEKQNKDEIDYLVQDIQALCREIAYDTGKYKRVGQDDN*