Scaffold Ga0070743_10041769

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10041769
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1570
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019141	Metagenome / Metatranscriptome	231	Y
F033429	Metagenome / Metatranscriptome	177	N
F063588	Metagenome / Metatranscriptome	129	N
F095495	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100417692	F095495	AGGAG	VSRCKACDAIMTESELKRTDYNTDKPLDLCYNCMSISTNAALAFEGGGVMSEEENVDLSELGFDISNN*
Ga0070743_100417693	F019141	GGAG	MSKIKEELIGYENNDWISKEDHVRVDEVTEYLLYAMSVSEMQQIAKQHIQHDLYTMARSDFNRVHYDTIGVHNK*
Ga0070743_100417694	F063588	GAG	MQFNISGMFLNIEPRFGFGFDIESVESRPVWAVVDGEMMAMPFDGLVLLLPFFIVTMGNVWTELPEDD*
Ga0070743_100417696	F033429	GAGG	MIIDNSTENDLLAETIDELGQSLTELQQVIADIKQQVNYREED*