Scaffold Ga0070743_10020256

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10020256
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2318
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016661	Metagenome	245	Y
F054351	Metagenome / Metatranscriptome	140	Y
F065668	Metagenome	127	N
F078585	Metagenome	116	N
F079927	Metagenome	115	N
F095309	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1002025611	F054351	AGGTGG	MTKHTYSIVDADGYILLTVESQFTTRDFDTEAKLSIKPLLPVIAKQYGVDYVYYTNTFRKDK*
Ga0070743_100202564	F078585	GGAG	MSRYDDCGSYDYSDYCEGKGYYESYTEKPFDEDEASLRRIEAREETERLAKLYPPIGKQEMQERIKEVKTRLGAKYND*
Ga0070743_100202565	F079927	GAGG	MSKDYREQSQLEDEADEKYLTMYQYYKQLTDYERGEYDALHSYPFDESEESNKDYTEGFRQGYEYAQQMGANSNE*
Ga0070743_100202567	F065668	AGG	MLYTIWVGGVEVNSHLVSREEAYRIASNWRNDGYTDVIVERHKPYA*
Ga0070743_100202568	F095309	AGG	MNYAEYRNKLRKLSAKYNESYKQYGWGADTTRKLRQQKTDLRAKYAVHSFDYAVESLTSKGLL*
Ga0070743_100202569	F016661	GAGG	MNYSAERYLALKQFEREQKRDKIRALLWNVSIGSIYAMAVIQVFTGVIS*