Scaffold Ga0070743_10004225

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10004225
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5234
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010684	Metagenome / Metatranscriptome	300	Y
F020167	Metagenome	225	Y
F034575	Metagenome / Metatranscriptome	174	N
F066789	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1000422510	F034575	GGAGG	MENNTTLDPYLMKLVELGMDGADILHGHLKVLMVEAEAILDRCIEAEEYSEDAMDSMARTEATGYFDALSEVYALTYAIAFAKEEVKNRKEILNG*
Ga0070743_1000422515	F020167	N/A	MTQTIRTIDELVNEMYMDNESHLEYMENMNGGDCDCAIHTTLNTIVKYWWDEEN*
Ga0070743_100042252	F066789	GGA	MTCTKYGCNYELDLDGQVTCTVCGAMDDDKQPVDIFEFQVDFE*
Ga0070743_100042258	F010684	N/A	MNEYQVEVIFEPTGDYMNFRYEAESDNEEDLCREILNQLSIVSFKVEE*