Scaffold Ga0070743_10002734

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10002734
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6586
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F001507	Metagenome / Metatranscriptome	681	Y
F023106	Metagenome / Metatranscriptome	211	Y
F063708	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1000273410	F001507	AGGA	MRTIEELVNEIYEDNLSHFEFEENMGGEPCDCHLHTTMETIVKYWWDEEK*
Ga0070743_1000273413	F063708	N/A	MDLNTFKEYINLHLISLEQDLEENPCSMNVVDIEGQIYATKHLMEVLNG*
Ga0070743_1000273418	F023106	GGA	MRISRRVTEEEKVANKLGNMVSDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYAYNNI*
Ga0070743_100027342	F000684	AGG	MSLNGYTYQIGDLFTTSKTGITGRIAGFTPMSNKVTRVSLVLANGSRRLAMVKTSK*