Scaffold Ga0070743_10000497

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10000497
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15362
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F061285	Metagenome / Metatranscriptome	132	Y
F083269	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1000049712	F061285	N/A	MTKKKTSKLSTFKKNKPLERKVADDLVRLHERNEKLREKEIGTSFLDLF*
Ga0070743_1000049717	F083269	N/A	MPIKKVSVTKTSQYYVDGEGTVDRDRIVTLSHDWTERDITLFKKLAKQGGTCRLQGLKYTIIPGEKITTSKGWADAGAAPMPGPEN*
Ga0070743_100004975	F001222	N/A	MKQLEKLVKEVITEAAKINFAGHSFMLKVDTNEDPQKKGVKVQFIPTQFGQMTPTEQNDIAIELETRLEKGLGQFDMRVERDRNLKDKTIIGFFIYIEYFDRIIRKALAGENPDQGDAGAEPEQV*
Ga0070743_100004977	F003188	AGTAG	MIEPRKKVRQVLFSIHQLSYRIKEKSPSNEHMNKKIFIEVLEQLKLIEERRDFMEEEIGMDMTQYEDQFFSVIENLFKLAFNKQQLGLIQLYLYQLVPDKEWDGTITIELGKEEKVVNFKTPEDVWNTINLFTNG*