Basic Information | |
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Taxon OID | 3300005941 Open in IMG/M |
Scaffold ID | Ga0070743_10000204 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22231 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (75.56%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000369 | Metagenome / Metatranscriptome | 1222 | Y |
F000376 | Metagenome / Metatranscriptome | 1216 | Y |
F000671 | Metagenome / Metatranscriptome | 945 | Y |
F008245 | Metagenome / Metatranscriptome | 336 | N |
F011394 | Metagenome / Metatranscriptome | 291 | Y |
F014140 | Metagenome / Metatranscriptome | 265 | Y |
F066776 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070743_1000020410 | F008245 | GAGG | MAEDRNTLQLISDITEFNDLHEYMQDEHLDKALSIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS* |
Ga0070743_1000020416 | F000369 | AGAAG | MTNEIEPAVHFDRMNKVVEELLKGNSATQIATITGFSRKDVLEFIDEWKGVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRIAMLQSVGVLENTQIASQIAETERKQEVLVGILKEVTATCPKCKMEVAKRLSQITGIVESVIIEEADVV* |
Ga0070743_1000020418 | F000376 | AGGA | MNEYQEMAKQCKCCTKHVPMPTTMKMYDGIIVCPTTLQNIIEYKKIWESYGQRPMGGIRKHFSEYVQQIVENSIDKNQDGSIQYN* |
Ga0070743_1000020434 | F014140 | N/A | MNKYRIKLDVEVEVEAFNAEDASEYIHDIFNIDDEIKKVNIIKITNK* |
Ga0070743_1000020436 | F066776 | GGAG | VLNLTLDGVELFIKRSQTKNQESFWKNYDLIIWKKDSGGYTDITGMYRKDTWGKTEKISVNHEGVWKLPKKYVKYFK* |
Ga0070743_1000020438 | F011394 | GGA | MTFIDKDKDHFKYGINQWTGEPNKPTFYNKEMALKIRELKKPTPDLKMDIVKYPDFLAIRLYEDNFGRYDGSLKMRVIDYVEMVKKILESYGVRVELEGKPGNGK* |
Ga0070743_1000020440 | F000671 | GAGG | MSEKILCYCCNKTKNSLSAKKSTLLNINLLLCETCIDSKLEPRWVVILAGRQIGHEFVKEHVSKKRYPGDEILASELLI* |
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