Scaffold Ga0070743_10000204

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10000204
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22231
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (75.56%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000671	Metagenome / Metatranscriptome	945	Y
F008245	Metagenome / Metatranscriptome	336	N
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F066776	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1000020410	F008245	GAGG	MAEDRNTLQLISDITEFNDLHEYMQDEHLDKALSIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS*
Ga0070743_1000020416	F000369	AGAAG	MTNEIEPAVHFDRMNKVVEELLKGNSATQIATITGFSRKDVLEFIDEWKGVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRIAMLQSVGVLENTQIASQIAETERKQEVLVGILKEVTATCPKCKMEVAKRLSQITGIVESVIIEEADVV*
Ga0070743_1000020418	F000376	AGGA	MNEYQEMAKQCKCCTKHVPMPTTMKMYDGIIVCPTTLQNIIEYKKIWESYGQRPMGGIRKHFSEYVQQIVENSIDKNQDGSIQYN*
Ga0070743_1000020434	F014140	N/A	MNKYRIKLDVEVEVEAFNAEDASEYIHDIFNIDDEIKKVNIIKITNK*
Ga0070743_1000020436	F066776	GGAG	VLNLTLDGVELFIKRSQTKNQESFWKNYDLIIWKKDSGGYTDITGMYRKDTWGKTEKISVNHEGVWKLPKKYVKYFK*
Ga0070743_1000020438	F011394	GGA	MTFIDKDKDHFKYGINQWTGEPNKPTFYNKEMALKIRELKKPTPDLKMDIVKYPDFLAIRLYEDNFGRYDGSLKMRVIDYVEMVKKILESYGVRVELEGKPGNGK*
Ga0070743_1000020440	F000671	GAGG	MSEKILCYCCNKTKNSLSAKKSTLLNINLLLCETCIDSKLEPRWVVILAGRQIGHEFVKEHVSKKRYPGDEILASELLI*