Scaffold Ga0070743_10000040

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10000040
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40329
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (27.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005287	Metagenome / Metatranscriptome	406	Y
F007770	Metagenome	345	Y
F020156	Metagenome / Metatranscriptome	225	Y
F023615	Metagenome / Metatranscriptome	209	Y
F042280	Metagenome / Metatranscriptome	158	Y
F048843	Metagenome / Metatranscriptome	147	Y
F092065	Metagenome / Metatranscriptome	107	Y
F099289	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1000004021	F005287	AGAAGG	MNINSDQIIYSEHNYDECFEFVDGKGRVPDGDAIGFVSEDGKSLTLFSDIVFSKYDHKYWNNLELENDIDRVII*
Ga0070743_1000004041	F048843	N/A	MNITNKAKKEKYFVFSVPTAYVYEIQAETEKEARKILEEHGGIEIHGEQCEMLNEDYVNADLEETYEM*
Ga0070743_1000004045	F099289	N/A	MITIEDANNESYYINPANVVYVKQREKFWKILLITGEAIMTKNKDGAMAIVNSIKRYS*
Ga0070743_1000004054	F023615	N/A	MNRFELEDAMSDLHQIGEDIETIIYAIGDCPINHTEDQLLNMLIGVKQLHDTRYQKMWNVFEQLIEKGIISNKEK*
Ga0070743_1000004074	F020156	N/A	MQTYRQALTEELQRLVKQESFKIQYAKDILELYDDEIEDHSDTTAYDKAMQDIDNVKNGEWDL*
Ga0070743_1000004075	F042280	N/A	MGFMKIKNKWDEEFEVNVGDWIGFKSDIEQDGKVKQIQRSRRAMLVENKNGFDGDYIGGDTEALVGFDEIWKG*
Ga0070743_1000004081	F007770	GGA	MSGEGLSVSFKRTKDTTKSNRQLLAEFRKLVYSSNKVMSHLKWYGEDYSVEIREHGDEELQKWQQEDVAIKDSFQFCISVYDSWYDDANYFECHKTEYSFVWIARKFAQENNLMYFPEGFPAEWIEQEIIDGEKNWNHFKVKPDDKNIDKICELWYDYGISSLEQERINWNQAKESIKKLMNKEKCVIAQQ*
Ga0070743_1000004084	F092065	N/A	MQEIINKIYERMEFCANAHTICQAEEQAFISELSCLNEVLDQIEGFPWDHLENDC*