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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005937 Open in IMG/M |
| Scaffold ID | Ga0081455_10034234 Open in IMG/M |
| Source Dataset Name | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4554 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | University of Puerto Rico, San Juan, Puerto Rico | |||||||
| Coordinates | Lat. (o) | 18.402889 | Long. (o) | -66.050054 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002532 | Metagenome / Metatranscriptome | 551 | Y |
| F003207 | Metagenome / Metatranscriptome | 501 | Y |
| F013128 | Metagenome / Metatranscriptome | 274 | Y |
| F013144 | Metagenome / Metatranscriptome | 274 | Y |
| F045614 | Metagenome | 152 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0081455_100342343 | F013144 | GGAGG | MRAARKYVTPVDMQIIYRAYRSVWTVLCHEKPAINSSEARELSDKVTRKLVEVALEGVIDLETLRDRTLAEIARL* |
| Ga0081455_100342344 | F045614 | N/A | MRKRTVKLHGRHCEISVHREGKHVWIAVGDYLGKEIRAQAESEGAAVKRWRETASTMGTTERAGHE* |
| Ga0081455_100342346 | F003207 | GGAG | VAAPERFIAWCKQERASIEQELDLLVSGKVRTGEDIGAGWVDTTDESIERARARLAQLNELLTEAGTATVVKPSDL* |
| Ga0081455_100342347 | F013128 | AGGAG | MKSILSMIVALGLAVAFTAPAFAGILDAKNKAECEQAGGVWVEKDNKCGAKKQ* |
| Ga0081455_100342349 | F002532 | GGAG | MKSLISTLVVALALAFTGPAFAGDVTTAKTQADCEKAGGMWDATTNKCSEKKM* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |