Scaffold Ga0081455_10030513

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10030513
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4895
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002616	Metagenome / Metatranscriptome	543	Y
F012501	Metagenome / Metatranscriptome	280	Y
F014442	Metagenome / Metatranscriptome	263	Y
F026078	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_100305133	F014442	GGAG	MMKFPSLDEENLLTYEVSDEVLETAAGKEIAANFTLGSCTGLAECPA*
Ga0081455_100305134	F002616	GAGG	VSNSILNSTSRVAIAGRIAEYRRLQTWNELTILGDYYLPLGKAEAQAKAARWLWQSFII*
Ga0081455_100305135	F026078	AGGAG	MRTLLGICVTAVIVAIVWSNLPTQAKQQFDGVSIDPLAMTDTVTNLLPEVHYDHGFIFPEQQ*
Ga0081455_100305139	F012501	AGGAG	MNKQMTPAEIELLQQNVARLAPISAKATLVEVEAGPLPPPNIPAALALASVTMK*