Scaffold Ga0081455_10014382

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10014382
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7764
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005463	Metagenome / Metatranscriptome	400	Y
F009435	Metagenome / Metatranscriptome	318	Y
F010060	Metagenome / Metatranscriptome	309	Y
F017384	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_1001438211	F005463	GAG	MKKQISIVTAATLTAVVVMLNGTSVATAQQPQYQVGGFPITPLQMSVLQPSAKMREQQRLSRQPTMDARRRPVYPDPGLANTGF*
Ga0081455_100143823	F010060	GGAGG	METVLFTDHGIVVFAITTSAIALILSVLGLTTPNRMRSDIEHQLRGLP*
Ga0081455_100143825	F009435	AGGAG	MTRRDQELLEKQLWGVSPRSPQNGIIILIVIAVFLVGMGTGDILSKTKQANTHDAVLILYPGQK*
Ga0081455_100143829	F017384	N/A	MSLELWREITAEYNGTAIKGSFKFLDGVVTVRTLHGTKAAQVRGRTPEQVAKTLLRELAREGRT*