Scaffold Ga0081455_10000060

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10000060
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 119012
• Total Scaffold Genes: 128
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 95 (74.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008142	Metagenome / Metatranscriptome	338	Y
F016892	Metagenome / Metatranscriptome	244	Y
F075145	Metagenome	119	Y
F080579	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_10000060101	F080579	GAG	MSSSSRSARRTVRYLALIYVVPGQREALRRYERHVLPVFKRHGGAFERIWTPVVPDAAPDPEAPDEIHLLRFDREDGLEAARRDPEMQALAELRGRVVRKAVLVRVADVPLARYFADPA*
Ga0081455_1000006092	F008142	AGGAG	MRRYLLMLVWVLWAHEMTVVGDRLVDRGYTAIDSFETRQLCHAAMADYSALRLVRQGRVRVDFSCLPDKTDPRTRTGVG*
Ga0081455_1000006095	F016892	N/A	MRRLTCAPSATTIGPMKWPSSRSVAVIWLLAALSLVGWLIVNLDTAGWIILTLTVGLMAFELTRRRNGQGAPPPE*
Ga0081455_1000006096	F075145	AGG	MPDAHRRAWLIRAAIWLATLFFAAMLFVPLVREAVRRAAEQVPGGHF*