Scaffold Ga0081455_10000051

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10000051
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 123542
• Total Scaffold Genes: 144
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 120 (83.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003059	Metagenome / Metatranscriptome	510	Y
F006812	Metagenome / Metatranscriptome	364	Y
F011852	Metagenome / Metatranscriptome	286	Y
F024641	Metagenome / Metatranscriptome	205	Y
F078898	Metagenome	116	N
F082926	Metagenome / Metatranscriptome	113	N
F087420	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_10000051138	F003059	AGGGGG	MKRGGIAAGVLAGAVIATTAMPASAQVRDAVYRGTLVCDKLPFSAGKGREAIEVTIAGGTVRYSHVVRLRDAAEPVPEQGKGSLSGQDIELQGSWKSGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKTLTRTCTGTIKRPFKVFLPGEKK*
Ga0081455_1000005118	F078898	AGG	MDASKRQLLQKALEKATEHESLIAVSTPAGKRILLRPDFICYETYVEGTDSDGQLLTLTYEQIASVDAE*
Ga0081455_1000005150	F082926	GGAGG	MPDISATGQPEQGNIVTWKVISIGTAIVLVVFLVLWL*
Ga0081455_1000005151	F011852	GGA	MHTTGVCVPMRMPLFSYFVVAGSTLTLGLLFISDRIEPLGSPVPTSQIVGITKPFKPEPERSPYKITGTNFAAAYRPAPARAAEEPKPVRRAESHRQQRPATADATDRGVPRWKYIAQNPFTALMGIH*
Ga0081455_1000005158	F087420	GGAG	MAPKPGSQSKRSAGGCAIALMLSVFPCAPANAAKPPYEGCVAVNKQEYNAAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*
Ga0081455_1000005165	F006812	GAG	MYVLLTILLVALPFGTAIACGALMQWAGNIISGWSSIGGMALGIYFFHKCMEVLTAT*
Ga0081455_1000005198	F024641	N/A	MKHVVTEETQSLAPVLCGRCGNLMRLVGSEPHPVEAKTDLLTYACTACDEFFVLPIETPAQG*