Scaffold Ga0075128_100149

Overview

Basic Information

• Taxon OID: 3300005922
• Scaffold ID: Ga0075128_100149
• Source Dataset Name: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1235
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Deep Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.5563
  • Long. (^o): 78.1877
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020827	Metagenome	222	Y
F058558	Metagenome	135	Y
F066289	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075128_1001492	F058558	GGA	MNINDKFQHRAFKAVVKTDDHDVAENEIMAGLSSVGVNDDEYRMLWTRDNFNTSSHNHVAAIFIVPTEYMADLPTLVERGNAISINEVELQSVDA*
Ga0075128_1001493	F020827	N/A	MKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDTIEVEHYLSDGTMITKLTVTVFDVLPVVKNIEPVEKPDHL*
Ga0075128_1001494	F066289	GGAG	MSDEIIVSSTEALYDDYANLKSQTPLGYAPFGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVY