3300005922: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14

Overview

Basic Information

• IMG/M Taxon OID: 3300005922
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0116313 | Ga0075128
• Sample Name: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7051863
• Sequencing Scaffolds: 11
• Novel Protein Genes: 21
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Deep Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.5563
  • Long. (^o): 78.1877
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006455	Metagenome	373	Y
F007732	Metagenome	346	Y
F020827	Metagenome	222	Y
F027372	Metagenome	195	Y
F030941	Metagenome	184	Y
F032101	Metagenome	181	Y
F046097	Metagenome	152	Y
F051583	Metagenome	144	N
F052986	Metagenome	141	Y
F057005	Metagenome	137	Y
F058558	Metagenome	135	Y
F066289	Metagenome	127	Y
F084902	Metagenome	112	Y
F104109	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0075128_100082	Not Available	2814
Ga0075128_100095	Not Available	2174
Ga0075128_100097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	2104
Ga0075128_100101	All Organisms → Viruses → Predicted Viral	1976
Ga0075128_100125	All Organisms → Viruses → Predicted Viral	1518
Ga0075128_100132	All Organisms → Viruses → Predicted Viral	1373
Ga0075128_100134	Not Available	1358
Ga0075128_100149	All Organisms → Viruses → Predicted Viral	1235
Ga0075128_100307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	748
Ga0075128_100470	Not Available	590
Ga0075128_100545	Not Available	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0075128_100082	Ga0075128_1000822	F032101	MSNQIEDDVIEQLVNEGANFEAALCVNSAIVGDLLIGELDSWNVGICEVKKDDEDLLVYGENGHLVKRVNTDVWTTSTLFEDTEVKDLAKIADKINSAIASECGEL*
Ga0075128_100082	Ga0075128_1000824	F046097	MSNQIEAVEIEAQNVLVDREGDMYSLRVIDTNSKVHRLESAALTLNDYAFATSGCEISEHGKVVTVKRLETGSRYIHLSTE*
Ga0075128_100095	Ga0075128_1000952	F006455	MYQQVKPPAGWTEIEPEFEFQHQTFQRRRDGLVVAIELERMSFYNVVTLPENYYQEDQVIDCIEIGVEPEDAAETAREWMEQNNRQ*
Ga0075128_100095	Ga0075128_1000953	F027372	MSDEIIVSSTEALYDDYANLKSQTPSGYAPYGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVHKSYDPELRFRLRMTEELGGFADTDCLTIEKIGEKAAERAAEIGRDYAPTDMFAPDEHFEIPTDSAQYVNIIAPQLQQLAGYAPYDSTPTDIGYYIHKEDVLPAFREAYYSEAINRQ*
Ga0075128_100095	Ga0075128_1000954	F006455	MNQQVKPPAGWAEIEPEFDHQRQTFQRRRDGLVLAIEREGRSSHNIVTLPENYYQDNQVIDYVEVGLKPENAAETAHEWMEQNNRQ*
Ga0075128_100095	Ga0075128_1000955	F057005	TDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVYKLYDPELRFRLRMTEELGGFADTDCFTVEEIGEKAAERAAKIGREYAPTDMFAPDEHYEIPTDSAQYSNNIAPQLRQLAGYEDGTGKGTYNTLSTDIGYYIHKEDVLPAFREAYHSEAINRQ*
Ga0075128_100097	Ga0075128_1000972	F052986	MIEHALVRHGYGTLDEIRQMDTRDFLDAIEYQEIASAIEQYHTDEAQRAR*
Ga0075128_100101	Ga0075128_1001014	F104109	MQELLNYVPEVIVVGNIEFAVAGAALALGFPKAARWVVERRTSTDLNSDGHVGKPPGDTSESQVEDAADRTGDK*
Ga0075128_100125	Ga0075128_1001252	F020827	MDGAKQPTVKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDTIEVEHYLPDGTMITKLTVTAFDVLPVVKNIEPVEKPDHL*
Ga0075128_100125	Ga0075128_1001253	F006455	MNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVAIERDGRRSHNIVTLPENYYQDNKIIDCIRAGVEPEDAAETAHEWMEQNNRQ*
Ga0075128_100125	Ga0075128_1001254	F057005	TDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVYESYDPELRFRLRMTEELGGFADTNCLTIEEIGAKAAERAAEIGRDYAPTDMFAPDEHYEIPTDSAQYVNDIAPQLQQLAGYAPYDTTPTDIGYHIHKEDVLPAFREAYHSEAINREI*
Ga0075128_100132	Ga0075128_1001322	F006455	MNQQVNPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVTLPENYYQDNRVFDFIEVGVEPEDAAETAREWMEQNNRR*
Ga0075128_100134	Ga0075128_1001342	F006455	MNQQVKPPAGWTEIEPEFDHQRQTFQRRRDGLVVAIEREGMSSYNVVTLPENYYQDNQVIDYVEVGVEPEDAAETAHEWMEQNNRQ*
Ga0075128_100134	Ga0075128_1001343	F020827	VKHDIAGWYEIGQRWKLWKDGQLRDFYIDHIHVLESDDPDRIEVEHYLSDGTMITKLTVTALDVLPVVKNIEPVEKPDHL*
Ga0075128_100134	Ga0075128_1001344	F007732	MSDEIIVSSTEALYDDYDNLKSQTPLGYAPFGLAGIVVNDCDIICGNCATDEELSDNDNGAIFGNSEWDYPAPVCDDCQKPLNVDLLVYKSYDPELHFRLRMTEVLGGFADTNCLTIEEIGEKAAERAAEIGRDYAPTD
Ga0075128_100149	Ga0075128_1001492	F058558	MNINDKFQHRAFKAVVKTDDHDVAENEIMAGLSSVGVNDDEYRMLWTRDNFNTSSHNHVAAIFIVPTEYMADLPTLVERGNAISINEVELQSVDA*
Ga0075128_100149	Ga0075128_1001493	F020827	MKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDTIEVEHYLSDGTMITKLTVTVFDVLPVVKNIEPVEKPDHL*
Ga0075128_100149	Ga0075128_1001494	F066289	MSDEIIVSSTEALYDDYANLKSQTPLGYAPFGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVY
Ga0075128_100307	Ga0075128_1003072	F030941	VIALAVLCAFMALPSVLGLLVIFHVFVRRKSAPVDASNRINHLRLVWFAMTREGLFVDLFPWLKNDEYDNVREHNA*
Ga0075128_100470	Ga0075128_1004702	F084902	NNIAPQLRQLAGYEDGAGKGTYNTVSTDIRYETNKEDLLHEIHKEDVLPAFREAYHSEAVNREI*
Ga0075128_100545	Ga0075128_1005451	F051583	MTPHVPLTVGRSAPEGTKPNMDYTNPEDVANIDEPTRQQEIGLLSGLVDGTFVCVNHRGFLVNRTDKGSIELSRDGEVLGGRYYVTENNFAGLVEWLNAKVALYGETA*