Scaffold Ga0075128_100134

Overview

Basic Information

• Taxon OID: 3300005922
• Scaffold ID: Ga0075128_100134
• Source Dataset Name: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1358
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Deep Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.5563
  • Long. (^o): 78.1877
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006455	Metagenome	373	Y
F007732	Metagenome	346	Y
F020827	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075128_1001342	F006455	GGAG	MNQQVKPPAGWTEIEPEFDHQRQTFQRRRDGLVVAIEREGMSSYNVVTLPENYYQDNQVIDYVEVGVEPEDAAETAHEWMEQNNRQ*
Ga0075128_1001343	F020827	GGAG	VKHDIAGWYEIGQRWKLWKDGQLRDFYIDHIHVLESDDPDRIEVEHYLSDGTMITKLTVTALDVLPVVKNIEPVEKPDHL*
Ga0075128_1001344	F007732	GGA	MSDEIIVSSTEALYDDYDNLKSQTPLGYAPFGLAGIVVNDCDIICGNCATDEELSDNDNGAIFGNSEWDYPAPVCDDCQKPLNVDLLVYKSYDPELHFRLRMTEVLGGFADTNCLTIEEIGEKAAERAAEIGRDYAPTD