Scaffold Ga0075128_100082

Overview

Basic Information

• Taxon OID: 3300005922
• Scaffold ID: Ga0075128_100082
• Source Dataset Name: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2814
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Deep Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.5563
  • Long. (^o): 78.1877
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032101	Metagenome	181	Y
F046097	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075128_1000822	F032101	GAG	MSNQIEDDVIEQLVNEGANFEAALCVNSAIVGDLLIGELDSWNVGICEVKKDDEDLLVYGENGHLVKRVNTDVWTTSTLFEDTEVKDLAKIADKINSAIASECGEL*
Ga0075128_1000824	F046097	N/A	MSNQIEAVEIEAQNVLVDREGDMYSLRVIDTNSKVHRLESAALTLNDYAFATSGCEISEHGKVVTVKRLETGSRYIHLSTE*