Scaffold Ga0075108_10002111

Overview

Basic Information

• Taxon OID: 3300005913
• Scaffold ID: Ga0075108_10002111
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9182
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F061285	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075108_1000211110	F001222	N/A	MKQLEKLVKEVLTEAAKIKFSGHEFMLKVDTNEDPQKKGVKVQFIPTQFGQISTTQQNDIAIELETRLEKGLGEFDMRVERDRNLKDKTIIGFFIYIEYFDRIIRKALAGENPDQNEVPSEEEM*
Ga0075108_1000211112	F003188	AGTAG	MVDPRKKIRQVLHSVYPLRYRIKQKEPNQDYMNKKLFIEVLNQMRQIEERRDFMEEEIGMDMTQYEEQFFAVIENLMKMHFTKEQLALIQMYLYQLIPDKEWDGTITIDVGKKEEIVKFKKPEDVWNVISKFIK*
Ga0075108_1000211116	F061285	N/A	MKKTKTAKLSTFKKHKSLERKVADDLVRLHERNEKLRDKTIDISFLDLF*