Scaffold Ga0075131_101123

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075131_101123

Scaffold Ga0075131_101123

Overview

Basic Information
Taxon OID	3300005908 Open in IMG/M
Scaffold ID	Ga0075131_101123 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome VIRRA3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	710
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Rauer Lake, Antarctica
Coordinates	Lat. (^o)	-68.8244	Long. (^o)	77.8344	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006455	Metagenome	373	Y
F020827	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075131_1011232	F020827	GGAG	MKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDRIEVEHYLSGGKMITKVTVTASDVLPVVKNIEPVEKPDHL*
Ga0075131_1011233	F006455	N/A	MNQQVKPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVKLPENYYQNNRVIGCIEVGVELEDAAETAHEWMEQNNRQ*

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