3300005908: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome VIRRA3

Overview

Basic Information

• IMG/M Taxon OID: 3300005908
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0116316 | Ga0075131
• Sample Name: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome VIRRA3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10306466
• Sequencing Scaffolds: 18
• Novel Protein Genes: 19
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Rauer Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.8244
  • Long. (^o): 77.8344
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002325	Metagenome	571	Y
F003128	Metagenome	506	Y
F006455	Metagenome	373	Y
F020827	Metagenome	222	Y
F030943	Metagenome	184	Y
F051583	Metagenome	144	N
F057005	Metagenome	137	Y
F058558	Metagenome	135	Y
F072888	Metagenome	121	N
F085171	Metagenome	111	N
F086358	Metagenome	111	N
F104109	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0075131_100137	Not Available	4576
Ga0075131_100140	All Organisms → Viruses → Predicted Viral	4463
Ga0075131_100226	All Organisms → Viruses → Predicted Viral	2413
Ga0075131_100266	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	2012
Ga0075131_100340	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1680
Ga0075131_100446	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36	1342
Ga0075131_100504	Not Available	1209
Ga0075131_100560	Not Available	1115
Ga0075131_100659	Not Available	997
Ga0075131_100702	Not Available	942
Ga0075131_100710	Not Available	934
Ga0075131_100738	Not Available	910
Ga0075131_100980	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum	768
Ga0075131_101123	Not Available	710
Ga0075131_101331	Not Available	638
Ga0075131_101699	Not Available	559
Ga0075131_101700	Not Available	559
Ga0075131_101815	Not Available	539

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0075131_100137	Ga0075131_1001373	F030943	MSNQIEADEIEQHENTPSVGPSLVGDLLTGELDSWRVVICKIEKDGDDLLVRGENGHLIKRVNTDVWTTSALSETEVKDLAKIADTINSAIASEEGDL*
Ga0075131_100140	Ga0075131_1001406	F051583	MDYTNPEDVANIDEPTHQQEIGLLSGLIDGKFVCVNYRGFLVNRTDNGSIELSRDGEVLGGRYYVTEHNFAGLVEWLNAKVALYGETA*
Ga0075131_100226	Ga0075131_1002262	F003128	MQIEVSASDIKSEKKADDRGRVTLGSEYAGKTVTVAVLEVEDE*
Ga0075131_100266	Ga0075131_1002661	F072888	EVNGENELTDYENVSKAINIPSMEKIKLTYPDGETDMSPCGQIVSISEHEASDSEAN*
Ga0075131_100340	Ga0075131_1003403	F085171	MNKNKHTDLDGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDELDAAVSVRVVESNQIVIEARVDLSNVELGDIDLTVD*
Ga0075131_100446	Ga0075131_1004462	F006455	MNQQVKPPAGWTEIEPEFDHQRQTFQRRRDGLVLAIEREGRSSYNVVTLPENYYQDNQVIDYVEVGLKPENAAEPAREWMEQNNRQ*
Ga0075131_100504	Ga0075131_1005044	F006455	MNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVAIEREGRSSYNIVTLPENYYQDDQVIDYVELGVKPENAAEPAREWMEQNNRQ*
Ga0075131_100560	Ga0075131_1005603	F104109	MQELLNYVPEVIVIGNIEFAVAGAALALGFPKAARWVVERRTSTDLNGDGHVGKPPGDTSESQVEDAADRTGDK*
Ga0075131_100659	Ga0075131_1006591	F002325	MVLNATQRAVLSSGIADTIPDNTVAHYDASQLSLNDGDTVSVWPDEQGDNDLDTQIGSPTYVESGINGHPAIAFNGDGLEVTGLSVTQPNTTYVVFEYQPDFDGGRIVSGVSERQITAWADKNYNGWRIYADEPLDGSNDIGIQQMTAVFDGANSIIRENGVETSVGDAGTNDLGGLSVGYDSYYDGYYADAYVSEIVVVNSGSVDLDFENHLLEKWDITA*
Ga0075131_100702	Ga0075131_1007022	F058558	MNINDKFQHRAFKAVVKTDDHDVAENAITAGLSWVGVNDDEYRMLWTRDHFNTSGHKQVAAIFIVPTEYMGDLPTLVERGNATSINEVELQSVDA*
Ga0075131_100710	Ga0075131_1007103	F051583	MDYTNPEDVANIDEPTRQQEIGLLSGLIDGKFVCVNHRGFLVNRTDNGSIELSRDGEVLGGRYYVTENNFAGLIEWLNAKAALYGETA*
Ga0075131_100738	Ga0075131_1007382	F002325	MVLNATQRAVLSSGIADTIPNNTVAHYDASQLSLNDGETVSVWPDQQGDNDLDIQTGSPTYVESGINGNPAIEFHGDGLEVTGLSVTQPNTTYVVFEYHSGFDGGRVLSGVSERQLTAWAYNNWGVYAGDNLFGSNDIGIQQMTTVFDGANSILRENGVETAVGDAGTKDLGGLSVGYDSWGYNYNDQARFYADAYVSEIVVVDSGSVDLDFENQLLGKWGITA*
Ga0075131_100980	Ga0075131_1009802	F003128	MQIEVSASEIKSEMKADDRGRVTLGSEYGGETVTVAVLEVKDEDGGESA*
Ga0075131_101123	Ga0075131_1011232	F020827	MKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDRIEVEHYLSGGKMITKVTVTASDVLPVVKNIEPVEKPDHL*
Ga0075131_101123	Ga0075131_1011233	F006455	MNQQVKPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVKLPENYYQNNRVIGCIEVGVELEDAAETAHEWMEQNNRQ*
Ga0075131_101331	Ga0075131_1013312	F003128	MQIEVSASDIKSEKKADDRGRITLGSEYGGETVTVAVLEVEDE*
Ga0075131_101699	Ga0075131_1016991	F086358	AEESIGPPNDKGPERYKRAVIAETNHLAFDWLDREIIQRQIDIIQGQTYDHPSHYAREIALKQIVTREYEDDNYDSRLRLWDELISFTRYTVKVEYEITEPDGTCHERSHQGLYWHQSQTKLHNQRLDTLQRTNNAEVDSNPDKQGKNRFDLLDITITPELRYTNLGPLIDTEWFVYNS*
Ga0075131_101700	Ga0075131_1017001	F086358	AEESIGPPNDKGPERYKRAVIAETNHLAFDWLDREIIQRQFDIIQGQTYDHPSHYAREIALKQIETREYEDDNYDSRLRLWDELIGFTRYNVEVEYEITEPDGTCHERSHQGLYWHQSQTKLHNQRLDTLQRTNNAEVDSNPDKQGENRFDLLDITITPELRYTNLGPLIDTEWFVYNS*
Ga0075131_101815	Ga0075131_1018151	F057005	PVCEDCEKPLNVNLLVHKSYDPELRFRLRMTEELGGFADTDCLTIEEICEKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAQYINNIGPQLRQLAGYEDGMGKGTYNTAPTDIVYDIHIEDVLPAFREAYYNEAVNREI*