Scaffold Ga0068863_100073211

Overview

Basic Information

• Taxon OID: 3300005841
• Scaffold ID: Ga0068863_100073211
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3241
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092546	Metagenome	107	Y
F103958	Metagenome / Metatranscriptome	101	Y
F105952	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068863_1000732111	F092546	GGAG	VLSEVPYRCLGRYREPAIVLLLTVLAFAVRVYRVDFNSLSEDESAKWTAIQEYRHGHF
Ga0068863_1000732112	F105952	GGAGG	VSRRRGAPNARRADPIGTSAGPISRERLDSRVTVLAIEQALAELGIHARLSDIVAKARSIENEFIELRTRRTPEQMC*
Ga0068863_1000732119	F103958	GGA	MTTPALNSRVQSLVIEYGVFWQFWPQFEQTHGERRQVGFEVELIGSHTSDLNHVDPACPR