Scaffold Ga0078893_14527865

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_14527865
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3738
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028771	Metagenome / Metatranscriptome	190	N
F036697	Metagenome / Metatranscriptome	169	Y
F104955	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_145278653	F104955	GGAG	MPFNKDVSDHFYELGLDLLFLGYSREDVELWIQQAEEDESYEXXXXXXXXXXXDYYYGEEEEDFI*
Ga0078893_145278655	F028771	N/A	MSFLRGNIGESLWLNELSKTHTDIEKAPNKRFYDWDIKANYKGKEVTYEVKYDSKGYYYADRYSRPVNLYIEFQNTKKGEDSGIIASKATYYVYILKSLEGVETAYVFKRLDLLNHLRNNDVKVKGNSFGGDNNAKGWTPPLNSLEHLIVKKIKFI*YNK*
Ga0078893_145278658	F036697	N/A	ITHYGCWEDDNDDFVKTETLLPTEYDKGNGRIEVTIVNNF*