Scaffold Ga0078893_11845363

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_11845363
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7368
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y
F040582	Metagenome	161	Y
F053980	Metagenome	140	Y
F103053	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1184536310	F103053	GGAGG	MNEYHKRSLYDVLDQFDTPKLQVYLLACQEQKEFDGVRVAANILRVRFINEKTY*
Ga0078893_1184536312	F040582	GGAGG	MGLISLDFQSIVIGYAIGIALMWSLHELLYGDNNNEQRAETDSKHTRPRYDRRYNMLHGDTPE*
Ga0078893_1184536315	F018906	GAGG	MKTCKANPLKLNETRFEAEAHKKEGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAVLKYPLGTDGEITAELIYDTEINKHLGCVDVIGWLDFGGVDAILKQIRNYNTGEYMINE*
Ga0078893_1184536317	F053980	GAGG	MNGYELLAQYKKQIKECFTVPNNLLPEEFQDNRMVYDQVSLATLERKCDQRDKCTLSSFEEEAIERAKRVQAYRSQHDRGLEITYIPR*
Ga0078893_118453638	F019646	N/A	MSNNFEIHYTSDCCGAYVHSDAELCPTCLEHCEVIEERVDYDCSEAVHAAQGLDYFCG*