Scaffold Ga0078893_10448420

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10448420
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32012
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (22.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F080238	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1044842018	F038672	N/A	MNELDVILRRNKLDIMIIKASHQLQKSKDKTKQEGLDTLIDIINLIRELQDEIREQSRTIAKLKLDNAVSYKENAILKTDFEKYKDSLIKAELETPKKK*
Ga0078893_1044842023	F030436	N/A	MKLTLNRIAELIEEYNSTDIFDGNTLNKQLKELTSRLYHIETMRTKAHEDYEKIIHNKVAEGFSVARATNEANVEVPEMYKLRRLLESGYRVVDSMRTNISFLKSEMYNTPKDY*
Ga0078893_1044842024	F056150	N/A	MDKKLIKKIENFILCIGREYNVVEIEDFKQDILILLLNKGEDFILQLDKENSIKKYVYKLCLFQIISERGQYRTKYYIPSHFSSIDDIETYSNTSFKDDVLKDLIDSLDGLDKIMMEQLLLCSGNKNCLSRKSNIHHNTIQYKFKELANKIKQKWTINEFYT*
Ga0078893_1044842028	F043411	N/A	MKTYIDEMMKRRLTYNGKRVYIKALDSKKALVSYAKEGNVGQFKVNIKDLADFK*
Ga0078893_1044842034	F029278	N/A	MKLTIPTEWEDITIAKYIDLRPVLNSKLNPIERVISILAVLTGEKKEVIRNVSLEQYKDIKEKMRFLETELPKQLEKKRFEIGGKFYEFKTDANKLLFGEYINNMEILQSAKDDEEAVFNNLHHILTTICRPVEKKFLRWKEIEVDGELLRETADNFLHNMPITIAYPIGVFFYNHLGNLTEDIKTSLVEEAERKVKEAEKELASLKDGDGGQP*
Ga0078893_1044842035	F020903	N/A	MADQLDIFGFDASQLEAVKIDKPKNVAEVFNNIAADMVYCLQQSVRKEKLVYQGNLEKSIKMPVKLFGQKMVATLYMAEYYDYVNKGVRGIGGKKKTKDEYWNIKAPDSPYQFKKGPSVSHIRQWAKSKGINEYIARNFIAYEGIRPRHFFDNCMKETFYGEAFNKFKTDIRIVAGEKVTKGLKEIIKK*
Ga0078893_1044842037	F080238	N/A	MDKKETEFDKMLRELAKKEVPERQCSIDDEDCESCGA*