Scaffold Ga0078893_10158711

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10158711
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2357
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008281	Metagenome	336	Y
F018155	Metagenome / Metatranscriptome	236	Y
F036651	Metagenome / Metatranscriptome	169	N
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_101587112	F067646	AGGA	MLEWILYFIAGVFGLIFIGIILSVLAFIYVIRELD*
Ga0078893_101587113	F018155	N/A	WFLIRRIIMGQHKAKVEQRRKELEYEKLDKQIKTYYFQKGAGKHYREVTYMSGKVVRTDYDA*
Ga0078893_101587116	F036651	AGGA	MREITLNEVGQTRPLILNVRQIRGYYRDFLTGETKVQTENREYVVRDSLTEIGYLMGVNK
Ga0078893_101587117	F008281	GGAG	MNLMCNTKHGAIEWRWKDLGQPSPEYKSLNHQWWIPKKSEFELVTKVDASIKQEIKDEIWEDMQSDLQYTKELYKLHKKIKRESK*