Scaffold Ga0078893_10149780

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10149780
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4645
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007139	Metagenome / Metatranscriptome	357	Y
F021865	Metagenome / Metatranscriptome	217	Y
F037681	Metagenome / Metatranscriptome	167	N
F099122	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1014978010	F099122	AGGAG	MAKEPLMTRLAQAYEDSKLLYFVTDGDGNCMLDRVSEVDARICAMKNGWSVGRHDVSPVTNYKPNEDLPFYNDDGT
Ga0078893_1014978011	F021865	N/A	MKCKCCDVFLTEWESKAKDPADRTQYLDLCSVCRHHSNPYTLLDDNEEIKKEDLTVDIG*
Ga0078893_1014978012	F007139	GAG	MIITLVESKVCLAVVISSPSQQSFFSGLRGKTMITKGIAKYVYLDSTEKFNGEDTGKYTLTVAVDDKEAKALEDAGVKVRTIKTEDGGSYKARKFSTKYPLSFEMVKTGDGEAIGHDFGAESEVQVLWKKGNEHPQHGVATYLTAVKVLKRTEGYKSQDAETSEFFA*
Ga0078893_101497807	F037681	AGGAGG	MTQEELTVKREDLYKSWGYDIDKLPFGAHMWLAPEKETRQNPYSGVKVLLNPVELAIYDHLMQSYHDHIELGTGGDLVEARKLYQDFKKGKEWFIENNIRAYMDLID*