Basic Information | |
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Taxon OID | 3300005837 Open in IMG/M |
Scaffold ID | Ga0078893_10149780 Open in IMG/M |
Source Dataset Name | Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Australian Centre for Ecogenomics |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4645 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia |
Source Dataset Sampling Location | ||||||||
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Location Name | Port Hacking, Australia | |||||||
Coordinates | Lat. (o) | -34.1192 | Long. (o) | 151.2267 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007139 | Metagenome / Metatranscriptome | 357 | Y |
F021865 | Metagenome / Metatranscriptome | 217 | Y |
F037681 | Metagenome / Metatranscriptome | 167 | N |
F099122 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0078893_1014978010 | F099122 | AGGAG | MAKEPLMTRLAQAYEDSKLLYFVTDGDGNCMLDRVSEVDARICAMKNGWSVGRHDVSPVTNYKPNEDLPFYNDDGT |
Ga0078893_1014978011 | F021865 | N/A | MKCKCCDVFLTEWESKAKDPADRTQYLDLCSVCRHHSNPYTLLDDNEEIKKEDLTVDIG* |
Ga0078893_1014978012 | F007139 | GAG | MIITLVESKVCLAVVISSPSQQSFFSGLRGKTMITKGIAKYVYLDSTEKFNGEDTGKYTLTVAVDDKEAKALEDAGVKVRTIKTEDGGSYKARKFSTKYPLSFEMVKTGDGEAIGHDFGAESEVQVLWKKGNEHPQHGVATYLTAVKVLKRTEGYKSQDAETSEFFA* |
Ga0078893_101497807 | F037681 | AGGAGG | MTQEELTVKREDLYKSWGYDIDKLPFGAHMWLAPEKETRQNPYSGVKVLLNPVELAIYDHLMQSYHDHIELGTGGDLVEARKLYQDFKKGKEWFIENNIRAYMDLID* |
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