Scaffold Ga0078893_10064080

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10064080
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4163
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019821	Metagenome	227	N
F021526	Metagenome	218	Y
F026851	Metagenome	196	Y
F027158	Metagenome	195	N
F081221	Metagenome	114	N
F087026	Metagenome	110	Y
F101070	Metagenome	102	Y
F105104	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1006408010	F101070	AGGAGG	VGKNKIRVDPLEMEAGDLIVTDGRMSLELGDVLLAVRKLSGEEMSESGKRHPFIDGRRVGDHWRLLSRLGVVEIWLDXXXXXXXXXXXXXKW*
Ga0078893_1006408011	F027158	GGAGG	MTNPSQTPISELTLAQVISLTQAGLIGLKDGSPVYTDKADRAAKAGATKARRQGVLSEVTEFFASPQGQNAKFFSVKPTSGMFAACALAINTKVQASREDILWSLKQLEKQGLASQVGIKSKEEDGKKFMVVVPVAEVNNFQRRWVHTIEAAPAEDAPAQDDSAE*
Ga0078893_100640802	F019821	GGAG	MTISNQTTLQELIDLGLFKTADIEKFNNKLTRGADRAARKALVEGTMSAIKALIQSEAHEGNRYWSVKPAAHSLGFMSYIETDRGTILKALTKLTEEGYLTKVGLKKVDGKLTELDKTQVNAFQLRYIVTPVEEADAAVDEEGS*
Ga0078893_100640803	F021526	GGAG	MRYFSIDYRSPPSGMGQIIDTTKPEKVGDQYNYILIDYGSDPHEDISYVMTKYFYSEQADQEGWAGPVMTDIFQYLRDQKVTHVLDGELSYNYEGGNEKDFKGLFTLDRWIEIMTSFL*
Ga0078893_100640804	F026851	AGGA	MTKQQLQQLLKDPVNMTPLEHAEVGRMKQAYFSAVAQETEAYISAKEAYDDAKEFMDLQDPGEREVLMQLLKNMRDCEHNMVIIATELETHFGISA*
Ga0078893_100640806	F105104	AGGAG	MLHHIYYTNPAGADNYMIVPFDEIKGTVTFLESLDYEVVAYWPIQEEAQTWEQ*
Ga0078893_100640808	F081221	GGAG	MLAALYNISILLTGFAAIVCASLTAVALINLFASSMLTYRDDKLLLAWALPSGLFFSGLLMVMLGWT*
Ga0078893_100640809	F087026	AGGAGG	MERGRWKAGDLVRVESTQKTGWGDECHNHLVLVLRMYKRKRQQQHYPLTAELEAGTRERDVIYEVLRDDGKYVKLGLKDYSYPNLRLTNRLVQRSCAEEET*