Scaffold Ga0078893_10009291

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10009291
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59629
• Total Scaffold Genes: 109
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (66.97%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024563	Metagenome / Metatranscriptome	205	N
F037473	Metagenome / Metatranscriptome	168	N
F063587	Metagenome	129	N
F068900	Metagenome / Metatranscriptome	124	N
F074735	Metagenome / Metatranscriptome	119	N
F077338	Metagenome / Metatranscriptome	117	Y
F082724	Metagenome / Metatranscriptome	113	N
F101204	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_10009291101	F068900	GGAG	MKEYEIYSEYMEGTRVGQVVRHLQNRYWGVFLTDKATGKGGFLMWHPTKSEHWCEDIAENFCLGMVNEDGTVE*
Ga0078893_1000929116	F082724	AGGAG	MSTANGTKLWLEEGIVHAGKMLQDLMKVEEFRDLSPAEKKIKTVSATYCYLYTKLKELDLLIDSEDNIFPDETIH*
Ga0078893_1000929139	F077338	AGGA	MEKKILQVVNLSPSESWVEKLPEVHPMKQIFWASIIQVTVFFGMLGMFQMNQWIFSI*
Ga0078893_1000929143	F074735	N/A	MNEKKLTKKELIKAIEGYQKVLDNPSMVKTLTRHMLGAYVVRLGRLNAELKRRK*
Ga0078893_1000929144	F024563	AGGAG	MKIEYTTKKDLIKQIEEKGLKPLSMNATIQDMKTYLSALKIEATLKKVAK*
Ga0078893_1000929146	F063587	AGGAG	MKQLELKLQVKGEMTDLKKSVPTLKQMIEDRKTKPKGLENLSNKMIEELKWLHRGRI*
Ga0078893_1000929151	F037473	N/A	MEKAKNGKKVEITKEAMVRLVEQKLGFKQFELNSLERANKATIALFLKR*
Ga0078893_1000929160	F101204	AGGA	MRNYRHFAVGMSANGSTIKRIVKPTEDSAYQMQWYGKVRKENPRYYNIELADGRTIRDTELVVELPLQDEVIH*