Scaffold Ga0078910_102246

Overview

Basic Information

• Taxon OID: 3300005835
• Scaffold ID: Ga0078910_102246
• Source Dataset Name: Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4798
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities

Source Dataset Sampling Location

• Location Name: Alnarp, Sweden
• Coordinates
  • Lat. (^o): 59.8152338
  • Long. (^o): 17.6620518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F082560	Metagenome	113	N
F103496	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078910_10224614	F082560	N/A	RRTGIVYAVVWRAWLPFNGGVNVSEKLIVKKIQEWFKAKGGVCHKVHGGPMSAGFPDIIGCMRGRTWVVEVKVPGAKPRVPRAKRNGAPQEVQEWLTMGATMLQAKTLYDWQNAGAVALVATSVEDMEQKFKEGQK*
Ga0078910_1022467	F022008	AGGA	MTMTEXEALREALSDLSKQLQTLSDESRTSFGRIYDRLTKIETQMSEREHQFNRYEKMLNNHETRIRAVEGEMGTLRDVPERLWHVSMSNSKLTGMIAAAGGVGGLVATLIVKMLGE*
Ga0078910_1022468	F103496	AGG	MPIDDRIRKLPLTKLIALCFTIFTCVLIVLDVTSLCPLTERSADLLKWLGSTIIVGYFGKSAYEHKIDTTAGRKVNS*