Scaffold Ga0074471_10936376

Overview

Basic Information

• Taxon OID: 3300005831
• Scaffold ID: Ga0074471_10936376
• Source Dataset Name: Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6123
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Astoria, Oregon, USA
• Coordinates
  • Lat. (^o): 46.17469
  • Long. (^o): -123.84933
  • Depth (m): .06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054984	Metagenome	139	Y
F085867	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074471_109363765	F085867	N/A	MSERKPELPVGARMAPREPVAAPVDRPLTAREAGLRRGQNKFGAATDGWDAYNDWLDRVRQPAPPSRQAVISKSLYSIASYKNWADKARDAFDKPK*
Ga0074471_109363766	F054984	N/A	MERLLKCLDDLDDLTVVFRVQAPAVIITALLAVVFVAGLGALLLLGPPDLLAAP*