Scaffold Ga0074477_1182083

Overview

Basic Information

• Taxon OID: 3300005826
• Scaffold ID: Ga0074477_1182083
• Source Dataset Name: Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4465
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Ilwaco, Washington, USA
• Coordinates
  • Lat. (^o): 46.31286
  • Long. (^o): -123.99663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034147	Metagenome / Metatranscriptome	175	Y
F059884	Metagenome / Metatranscriptome	133	Y
F088879	Metagenome / Metatranscriptome	109	Y
F099147	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074477_118208310	F034147	N/A	MAKYHSAPYKEGEIFFYPNLGALANFEDFTGKGIADAFSGKTIPKLDDVYGLLHECHKVACLRKSTNPVGLDELKVWVEGKDVMKLFSEILADLLLELGLGETQEKKT*
Ga0074477_118208311	F059884	N/A	MLLVGRTKIPYEQLFCLSRKELKALVKGHEIDQKDMIESMRVHAIIGLQPHLKKGANISPNKIWPLPWDNIVKPLESTPQDFAKAKKLLEIASKLEKNGKSKNRR*
Ga0074477_11820834	F099147	N/A	MVKLLVDLVPFEKGEIITVGKIYDTYLVEKGLAVWIKVQKQDFKKK*
Ga0074477_11820838	F088879	N/A	MRDIATDIRVAIIDALTPLTLSGKIIPVHDTELPVGVAPASYLGSQAYVLITDQNEAETTNNDCSIRQNATFQINIITKFPQGNGGKKVSETISDAIQLKMNLTDLVLPEDLQAVNIRKNFSRVQIEQGSSQIAYQKILSYTLDVFFVS*