Scaffold Ga0077106_147330

Overview

Basic Information

• Taxon OID: 3300005818
• Scaffold ID: Ga0077106_147330
• Source Dataset Name: Macropus eugenii forestomach microbial communities from Canberra, Australia - Macropus_eugenii_combined
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 764
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Stomach → Unclassified → Macropus Eugenii Forestomach → Macropus Eugenii Forestomach Microbial Communities From Canberra, Australia

Source Dataset Sampling Location

• Location Name: Canberra
• Coordinates
  • Lat. (^o): -35.310643
  • Long. (^o): 149.124184

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0077106_1473301	F013656	AGGAG	LGDKMSKIYKEPNKSETETTINVVYNENKLSIYTNKIQLQKQLNKLIGEPTKEYKIKRSIAGSSWDISLDNKVLISRVVLKANVFDL*