Scaffold Ga0079957_1075462

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1075462
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1928
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F002241	Metagenome / Metatranscriptome	579	Y
F059096	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10754621	F059096	N/A	MTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLDDAISDFAGREKLDVELPR*
Ga0079957_10754622	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVSNCDVYIVKVELYRTEADANPWTTGLSSESKSKQYALELAETGALGRALNLAGFFAKPTGAPKKAIQTTKPELASFIKEQRPNDPEPIVWDVSAIAAELGAEVIDELPLCKCGRGPMILKSGTKDGKEYRGYTCPSKERADQCPARWMRIGADGHWVFQK*
Ga0079957_10754623	F000545	N/A	MDENRCRWALGLSEMRADAHPFKCSTCLAVTPHIELHRYETSDIPEAPEEVWLIECQRCFLQRIIYPADRVASKEDDITRCDKCGNYKMKAGSCRICRLAAGFEKQMVRYWNGNETLERPYEDGKAPLY*
Ga0079957_10754624	F002241	AGG	MAKPHSIRYIRQLMEWGFDKEFIAKDCGINIHSLEVRLNRAKKREQVNGNQGIEPGTSSSESDS*