Scaffold Ga0079957_1059420

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1059420
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2282
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007363	Metagenome / Metatranscriptome	352	Y
F013526	Metagenome / Metatranscriptome	270	Y
F057310	Metagenome / Metatranscriptome	136	Y
F091432	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10594202	F013526	GAGG	MKKNVLISFIVEAETDIEAVFALNKILYQLPDKDLVKFDVFDVVECDGVKA*
Ga0079957_10594204	F091432	AGGA	MDLKEFRDFIIAQRLAETKEKRNANLTAILSVANATITNTNERKTK*
Ga0079957_10594205	F007363	AGGA	MKSYSIVDLLVDQYYAPTSLRRRFEGGIINYAEKRENVYLSEGYEAYSIRYRPTGRLKDEWATVAVKVAD*
Ga0079957_10594209	F057310	AGGA	MKITYSVWQGGLIKGSRFTASTMAEVIKTIDELNELGVEPKFEAFISLVEQDNN*