Scaffold Ga0079957_1024408

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079957_1024408

Scaffold Ga0079957_1024408

Overview

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1024408 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4130
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037190	Metagenome / Metatranscriptome	168	Y
F040535	Metagenome / Metatranscriptome	161	Y
F091432	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_102440813	F091432	N/A	MSVASTIIQLTNERKTKMDLIDFRNHVLAERLAEIKEKRNNNLTAILSVAGATISTT
Ga0079957_10244087	F040535	AGG	MLTLSYTAEKEGNFVSVDNRLMLNEWSINYLMETLVANGYTIEEMSVADAIL*
Ga0079957_10244089	F037190	AGGAG	MDRYLLIELGSDGIAFETAQFDFYASWLGIGLFVVSVVAYKIYKNRK*

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