Scaffold Ga0079957_1022990

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1022990
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4292
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003066	Metagenome / Metatranscriptome	509	Y
F011384	Metagenome / Metatranscriptome	291	Y
F011921	Metagenome / Metatranscriptome	285	Y
F024784	Metagenome	204	Y
F068573	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_102299010	F003066	GGAG	MAKKEPVAWLYEEFDVRSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLIPGEPVEEYKGLSKYDSKKLTEAHGGL*
Ga0079957_102299011	F068573	GGAGG	MVDSKPLTLEEIMKAYSKVFPTRYEPMTLERMIQFVRIIEQLHGVKDVH*
Ga0079957_102299012	F011384	GGAG	MYTKLDDQRQAKFVIKYITAHPSCSIKDIVQECVTNRTRLKYLESQGYIVLPKLTRMDILDRRFKNRKYVSVTVGREYGKWQEQKRY*
Ga0079957_102299013	F024784	GGAG	MARAEKILEVVVWLLIVGGMGWFFYGCYQLIDLFFIRG*
Ga0079957_10229905	F011921	N/A	MAIPFCILGVYNMANGLEHIADILKRLNDELKLDNDKWERENVTTTTLRPGNDATTSTRGESKDEL*