Scaffold Ga0079957_1022253

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1022253
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4387
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027512	Metagenome	194	Y
F029657	Metagenome	187	N
F055668	Metagenome / Metatranscriptome	138	Y
F078217	Metagenome	116	N
F079959	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_102225312	F079959	GGA	MSGQYKEKICPKCGVKHRKRGLHCSASCAATGRPVSEETKELHRQNTREYLQTPEGIANSRKTGDGTQIAADEFAVDIPDIMDLRDYDSLDGYDKAENW*
Ga0079957_102225313	F055668	N/A	MTTPTLEEINELCRAIAEETLDADTTELEELELQKQYEFMQYADEAADLDAEYYGVA*
Ga0079957_10222532	F078217	AGGAG	MQNNKNFWGEPDDIEPLPEWMDPRTYQNNGQYKRKTKSLNEAINDALQKPAVPVIIKEPNL*
Ga0079957_10222534	F027512	AGGA	MSVEEQIEEFLKMYGDRLPNPEHCPKEFEYYVRLYKYCKGLL*
Ga0079957_10222539	F029657	AGGAG	MKTICKPCITIRTFFFLLKKNYQQFRKDLRDYSKVNYYACEMPKYKAPKNIDEGMAEVKRVREIAKRLHDKEKAEEVLKSISKVG*