Scaffold Ga0079957_1018339

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1018339
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4972
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018914	Metagenome	232	N
F026545	Metagenome	197	N
F066571	Metagenome	126	N
F068576	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101833911	F026545	N/A	GAAKPPVWTATNCTDCGKVIDYTDPKRIVFPAQRVLVIHENGRRFEWRHKACVK*
Ga0079957_10183396	F018914	GGAGG	MAKAQDKFTVLRGWVADAQVMLGVDSWEVTIIEAASDVDAWADIDAHAQQPTADLRVSHDFWTQTPEKQRLILTHELLHLVLARYARVTETMEESLGKLAWAVLEPQLEDAEERATEHLARIIAPYLALPAFPKA*
Ga0079957_10183397	F066571	AGGA	MRYAFSATARPFGVLPSLALPVESSHRQGLTWGSVDACTTITAIAGQQGTSGATPLLLHHYWRANG*
Ga0079957_10183398	F068576	AGGA	VDISKPSNRSESNRVLSTRAARQRSAGGNHHGVTKEQREFQQSCAAWSLKLGVKLNALFNLMPQFGKSVHWARERYYGGTFVTDADLYWINDRIKDETDIDRGKRLHIYAAAVDLMCKVCAGDEEKTPTCWDQTCPLRPVSPLPLRNPK*