Scaffold Ga0079957_1012859

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1012859
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6207
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006218	Metagenome / Metatranscriptome	378	Y
F034179	Metagenome / Metatranscriptome	175	Y
F081080	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101285911	F034179	N/A	MSDQITTMFAQAYSKKKPTLLAQQGSNVKIKVKKKNGKKKS*
Ga0079957_101285916	F081080	N/A	MNFLLVFAVCSMVNGNCLDTMSTGKKFNTFRECTIAGYEFIAEQNKLFPLDQFEKVKPSFHFDCIETAEQPT*
Ga0079957_10128598	F006218	AGAAG	MGKRKEILKSCGNCHICGKEHMSNEGGWIINAEKLNFCHSLDHSCYEIYFNNVRAAEKQKVVINDNNDKRMNMYIEYLKTQKCKHKYAGE*