Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1005681 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10112 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (80.00%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000684 | Metagenome / Metatranscriptome | 938 | Y |
F000808 | Metagenome / Metatranscriptome | 882 | Y |
F004132 | Metagenome / Metatranscriptome | 451 | Y |
F005348 | Metagenome / Metatranscriptome | 403 | Y |
F012455 | Metagenome / Metatranscriptome | 280 | Y |
F018352 | Metagenome / Metatranscriptome | 235 | Y |
F047494 | Metagenome | 149 | Y |
F084217 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0079957_100568111 | F000808 | AGGAG | MEYTYSLTTSYDGVLVDTLRVSDMLVAVDAWNKCVDYGFAKEYATYNLSDPTGKMYTKTFYANGEVAIK* |
Ga0079957_100568112 | F018352 | AGGA | MGKFKNTLMEILAHDECYGKGWIYTGNNKDFDVYACECNLYSVPADEIMEYHQLFKTKENA* |
Ga0079957_100568115 | F005348 | AGG | MINSVMSFDCKECNGKGLIFWGDNLDYNVEQCECENFTLGELFTTREAN* |
Ga0079957_100568117 | F084217 | AGG | MSDYLNYLDEIYDELVDEFGSEATLAYHQANEKEM* |
Ga0079957_100568119 | F012455 | N/A | MFNKIKNKVIRIQELRRSNAATPIANKKKYSRKIKHKNKLEQMF* |
Ga0079957_100568120 | F047494 | GGTGG | MTTLEITKCVKHTPNKNAISIVNDEKFTFCENCEQNITSHYREDEDFISYWSSWKVGK* |
Ga0079957_10056813 | F004132 | AGGA | VSDILTQEQLSVPYNPNLLVTYKYIPETYAAPESPTFMTDKVTQIEWDLHNGRNTLKQLAERRLDISWLEDQIVEWHDPNYTKHDVLQAIMEHFGFNPTKEVEVQGTVSFSGTINIPLSEIEDFDLSNVTIDVDLSSYEYDADLNVDEVSLEDAY* |
Ga0079957_10056815 | F000684 | AGG | MTLGGYTYQIGDLFTTSKTGITGRIVKFSPINSKLTRVSLQLANGAQRLAMVSTTK* |
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