Scaffold Ga0079957_1005681

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1005681
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10112
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F012455	Metagenome / Metatranscriptome	280	Y
F018352	Metagenome / Metatranscriptome	235	Y
F047494	Metagenome	149	Y
F084217	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100568111	F000808	AGGAG	MEYTYSLTTSYDGVLVDTLRVSDMLVAVDAWNKCVDYGFAKEYATYNLSDPTGKMYTKTFYANGEVAIK*
Ga0079957_100568112	F018352	AGGA	MGKFKNTLMEILAHDECYGKGWIYTGNNKDFDVYACECNLYSVPADEIMEYHQLFKTKENA*
Ga0079957_100568115	F005348	AGG	MINSVMSFDCKECNGKGLIFWGDNLDYNVEQCECENFTLGELFTTREAN*
Ga0079957_100568117	F084217	AGG	MSDYLNYLDEIYDELVDEFGSEATLAYHQANEKEM*
Ga0079957_100568119	F012455	N/A	MFNKIKNKVIRIQELRRSNAATPIANKKKYSRKIKHKNKLEQMF*
Ga0079957_100568120	F047494	GGTGG	MTTLEITKCVKHTPNKNAISIVNDEKFTFCENCEQNITSHYREDEDFISYWSSWKVGK*
Ga0079957_10056813	F004132	AGGA	VSDILTQEQLSVPYNPNLLVTYKYIPETYAAPESPTFMTDKVTQIEWDLHNGRNTLKQLAERRLDISWLEDQIVEWHDPNYTKHDVLQAIMEHFGFNPTKEVEVQGTVSFSGTINIPLSEIEDFDLSNVTIDVDLSSYEYDADLNVDEVSLEDAY*
Ga0079957_10056815	F000684	AGG	MTLGGYTYQIGDLFTTSKTGITGRIVKFSPINSKLTRVSLQLANGAQRLAMVSTTK*