Scaffold Ga0079957_1005153

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1005153
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10690
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (27.59%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F006260	Metagenome / Metatranscriptome	377	Y
F009604	Metagenome / Metatranscriptome	315	Y
F010397	Metagenome / Metatranscriptome	304	Y
F019824	Metagenome / Metatranscriptome	227	Y
F023346	Metagenome / Metatranscriptome	210	Y
F045085	Metagenome / Metatranscriptome	153	Y
F079812	Metagenome / Metatranscriptome	115	N
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100515310	F079812	N/A	MSTKYVMDGKNSRIGYVKDSGTVIYAHGPNGENVGYYQKSTDTTFDRNGKRYGFGDLTNALVFEAVRKI*
Ga0079957_100515313	F009604	N/A	MIKCGCGNEIHPERYELGYKICLSCGENSAKRNQKFGYLHFGHKTAGSIVITSKKAFDNYSKVSYRKGKASNMAYASRLSTSF*
Ga0079957_100515314	F023346	N/A	MLNKHMKSDTNIVSKNIITTYARKIRNVQSEQIDPYIELIERELIKVYPELKDRGDNALNWAYDIANSASNTDVTDTLTRLDDIISNERKEKWVCNYCGKNTYNDDVEYLFGTNHIGCALEEDIKNREHSDPDYILDARLRKITELESELRNTKRELVNMELRLEHLRSDYPHEPTN*
Ga0079957_100515315	F045085	N/A	MNKLINLTVGLLFGIIFAIGLLLILTIFFAVLIPFIFYLTVREVLKHLTNAK*
Ga0079957_100515317	F010397	AGGAG	MNINEFERSKPVVTMQKINELIKLIDDERVKTEILYKDRVRSLDDISILLKEMKKSFVKGE*
Ga0079957_100515318	F001840	GGA	MKDQDSIFLICDCFSHGLLVEKFKDEEEVYLSLFERGLNGRVLGWSERLKWCWQILRYGHPWSDSVILNTENQTKLKEFLNEHK*
Ga0079957_100515320	F006260	N/A	METELTIKDKVINPIIIQHDDLKFDGKNITIPRYYIDSLCEYIKDYNTDGELQADIEDYQLFRNFLWDIQEYKNKGN*
Ga0079957_10051535	F019824	N/A	MDKYITDNFTGSIDDLLNHCTNLDVDKVEEQVHVEEREACIQVIMKELDCNEFEAEIIYNEISLAETKSTVDKMVADGLLYISGYNEEGEPLFSLTELGKAVRNELGDGK*
Ga0079957_10051539	F091907	N/A	MNKSKTGRKATAVNEITDRNFTIVDLININATVKAPTIRMHVKRSVTAGRYKISGSQKTGKRGKPSIVYTYDATPAVAATTTTAEPTQTSAN*