Scaffold Ga0079957_1001585

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1001585
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20779
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (24.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F008356	Metagenome / Metatranscriptome	334	Y
F035227	Metagenome	172	Y
F035278	Metagenome / Metatranscriptome	172	Y
F041765	Metagenome / Metatranscriptome	159	Y
F056337	Metagenome / Metatranscriptome	137	N
F090104	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10015851	F041765	AGAAG	MLNHKKIMEDSAAFFNKEVDKVILKVTKAKTEKTRSKYLKQMLALRNRLTLEVKMLDDLGNF*
Ga0079957_100158510	F001732	N/A	MTSKIVSILLLVFLVTGCFSTIKPAKQIDDNQKIIAKEEKKVDDTLVQIEKNDKGKKIQTSGLSIGIQHSLNQVTNAPVQVDTALKLNERVISIVGSPHIDETKRIKATVDLLNSALVEERKKGEELLAQRDDIINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFIVSALTTIMVFVIVFVLLRLLATVHPAAAAAFSIFNMLGSAVISILKALTPKAFEMCNFTTKEKVDEFKSPLVKIVDVIQELKEKQKESPDRVYPLNELLKRFEKEMDSDEKDLIDHILREQKWIK*
Ga0079957_100158512	F035227	AGG	VNDNSSNIHRAVNITTLSEKEIKKYSLVKTGDLFKKDDHLLLYDDQYVKIGNSSILFKNKVLKENTVYRRK*
Ga0079957_100158515	F090104	GGA	MKEVEYILKKLIKSIQTVDTNKNIPYLVKDIDKHVQEAYAQLYDYRAQKSVYKPLNDNKRGHCC*
Ga0079957_100158519	F035278	GGA	MNDKHIKKILDKQFKIANLDLKYEDVCNNQTPNWLTKYSYAPEDNEKWKNWTMKYMREKMKLTKDKALIETAWIDLNFGLRTSTRSVKNKKNK*
Ga0079957_10015854	F008356	N/A	MNPSEFERTKPVNTYKKIKQLEKLIKEEQIKTENLYANRIATLDTMLNAVHDLMETFKRGE*
Ga0079957_10015857	F056337	N/A	MSDQYNNNSYDAVLSRMEQKLDTIAENIDNIKQSQKDLESRVSGLEYFKYYLAGIVAAVTIGANYLMNKVKNG*